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Merge pull request #290 from include-dcc/2026-02-02-PL
2026 02 02 pl
2 parents e9281a2 + 0b94b58 commit c3ea0de

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Lines changed: 30 additions & 8 deletions

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‎src/data/sheets/schemasheet.tsv‎

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Original file line numberDiff line numberDiff line change
@@ -20,7 +20,7 @@ class slot title description required range any_of minimum_value maximum_value m
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publication Publication uri true
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expectedNumberOfParticipants Expected Number of Participants true integer
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guidType GUID Type System used to generate globally unique identifiers (GUIDs) true enum_guidType
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guidMapped GUIDs Mapped? For studies using NDAR GUIDs, have the GUIDs been added to the INCLUDE GUID Mapping File? boolean
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guidMapped GUID Mapped For studies using NDAR GUIDs, have the GUIDs been added to the INCLUDE GUID Mapping File? boolean
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dbgap dbGaP string true
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acknowledgments Acknowledgments Funding statement and acknowledgments for this study string true
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citationStatement Citation Statement "Statement that secondary data users should use to acknowledge use of this dataset. E.g., ""The results analyzed and <published or shown> here are based in whole or in part upon data generated by the INCLUDE (INvestigation of Co-occurring conditions across the Lifespan to Understand Down syndromE) Project <insert accession number(s) and/or study DOI(s)>, and were accessed from the INCLUDE Data Hub and <insert other database(s)>.""" string true
@@ -162,6 +162,7 @@ DataFile sampleGlobalId Biospecimen
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AECOM-DS enum_studyCode aecom_ds
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APAP21 enum_studyCode apap21
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ARC-DS enum_studyCode arc_ds
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ASPIRE enum_studyCode aspire
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BEST21 enum_studyCode best21
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BrainPower enum_studyCode brainpower
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BRI-DSR enum_studyCode bri_dsr
@@ -188,13 +189,15 @@ DataFile sampleGlobalId Biospecimen
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EACH-DS enum_studyCode each_ds
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ECODS enum_studyCode ecods
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EXcEEDS enum_studyCode exceeds
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HomeGrown enum_studyCode homegrown
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HTP enum_studyCode htp
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IBIS-DS enum_studyCode ibis-ds
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JAKi-DS enum_studyCode jaki_ds
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MOSAIC-DS enum_studyCode mosaic_ds
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OPTimal enum_studyCode optimal
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TEAM-DS enum_studyCode team_ds
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TOMI enum_studyCode tomi
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TOPS-DS enum_studyCode tops_ds
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TRC-DS enum_studyCode trc_ds
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X01-deSmith enum_studyCode x01_desmith
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X01-Hakonarson enum_studyCode x01_hakonarson
@@ -203,16 +206,20 @@ DataFile sampleGlobalId Biospecimen
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KF enum_program kf
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Other enum_program other
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enum_researchDomain
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Auditory Perception enum_researchDomain auditory_perception mesh:D001307
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Behavior and Behavior Mechanisms enum_researchDomain behavior_and_behavior_mechanisms mesh:D001520
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Congenital Heart Defects enum_researchDomain congenital_heart_defects mesh:D006330
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Embryonic and Fetal Development enum_researchDomain embryonic_and_fetal_development mesh:D005314
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Immune System Diseases enum_researchDomain immune_system_diseases mesh:D007154
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Hematologic Diseases enum_researchDomain hematologic_diseases mesh:D006402
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Neurodevelopment enum_researchDomain neurodevelopment mesh:D065886
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Nutritional and Metabolic Diseases enum_researchDomain nutritional_and_metabolic_diseases mesh:D009750
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Sleep Wake Disorders enum_researchDomain sleep_wake_disorders mesh:D012893
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All Co-occurring Conditions enum_researchDomain all_co_occurring_conditions mesh:D013568
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Physical Fitness enum_researchDomain physical_fitness mesh:D010809
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Psychiatric Disorders enum_researchDomain psychiatric_disorders mesh:D001523
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Respiratory Tract Diseases enum_researchDomain respiratory_tract_diseases mesh:D012140
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Social Determinants of Health enum_researchDomain social_determinants_of_health mesh:D064890
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Other enum_researchDomain other
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enum_participantLifespanStage
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Fetal enum_participantLifespanStage fetal
@@ -242,8 +249,7 @@ DataFile sampleGlobalId Biospecimen
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Other Data obtained from other source, such as tissue bank enum_clinicalDataSourceType other
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Unknown enum_clinicalDataSourceType unknown
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enum_dataCategory
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Unharmonized Demographic/Clinical Data enum_dataCategory unharmonized_demographic_clinical_data
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Harmonized Demographic/Clinical Data enum_dataCategory harmonized_demographic_clinical_data
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Demographic/Clinical Data enum_dataCategory demographic_clinical_data
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Genomics enum_dataCategory genomics
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Transcriptomics enum_dataCategory transcriptomics
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Epigenomics enum_dataCategory epigenomics

‎src/linkml/include_schema.yaml‎

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@@ -469,7 +469,7 @@ slots:
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guidMapped:
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definition_uri: include:guidMapped
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description: For studies using NDAR GUIDs, have the GUIDs been added to the INCLUDE GUID Mapping File?
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title: GUIDs Mapped?
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title: GUID Mapped
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range: boolean
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dbgap:
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definition_uri: include:dbgap
@@ -1083,6 +1083,8 @@ enums:
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title: APAP21
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arc_ds:
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title: ARC-DS
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aspire:
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title: ASPIRE
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best21:
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title: BEST21
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brainpower:
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title: ECODS
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exceeds:
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title: EXcEEDS
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homegrown:
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title: HomeGrown
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htp:
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title: HTP
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ibis-ds:
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title: TEAM-DS
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tomi:
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title: TOMI
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tops_ds:
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title: TOPS-DS
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trc_ds:
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title: TRC-DS
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x01_desmith:
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#TODO: replace/add NIH internal categories from Huiqing
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definition_uri: include:enum_researchDomain
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permissible_values:
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auditory_perception:
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title: Auditory Perception
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meaning: mesh:D001307
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behavior_and_behavior_mechanisms:
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title: Behavior and Behavior Mechanisms
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meaning: mesh:D001520
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congenital_heart_defects:
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title: Congenital Heart Defects
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meaning: mesh:D006330
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embryonic_and_fetal_development:
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title: Embryonic and Fetal Development
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meaning: mesh:D005314
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immune_system_diseases:
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title: Immune System Diseases
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meaning: mesh:D007154
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physical_fitness:
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title: Physical Fitness
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meaning: mesh:D010809
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psychiatric_disorders:
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title: Psychiatric Disorders
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meaning: mesh:D001523
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respiratory_tract_diseases:
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title: Respiratory Tract Diseases
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meaning: mesh:D012140
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social_determinants_of_health:
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title: Social Determinants of Health
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meaning: mesh:D064890
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other:
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title: Other
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enum_participantLifespanStage:
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enum_dataCategory:
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definition_uri: include:enum_dataCategory
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permissible_values:
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unharmonized_demographic_clinical_data:
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title: Unharmonized Demographic/Clinical Data
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harmonized_demographic_clinical_data:
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title: Harmonized Demographic/Clinical Data
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demographic_clinical_data:
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title: Demographic/Clinical Data
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genomics:
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title: Genomics
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transcriptomics:

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