-
Notifications
You must be signed in to change notification settings - Fork 1
Expand file tree
/
Copy pathtree.c
More file actions
137 lines (127 loc) · 3.59 KB
/
tree.c
File metadata and controls
137 lines (127 loc) · 3.59 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
#include <stdio.h>
#include <stdlib.h>
#include "tree.h"
#include "utils.h"
#include "data.h"
void change_leaves(tree *t, char *leaf_list)
{
list *llist = get_paths(leaf_list);
char **leaves = (char **)list_to_array(llist);
int n = llist->size;
int i,j;
int found = 0;
for(i = 0; i < t->n; ++i){
t->leaf[i] = 0;
for(j = 0; j < n; ++j){
if (0==strcmp(t->name[i], leaves[j])){
t->leaf[i] = 1;
++found;
break;
}
}
}
fprintf(stderr, "Found %d leaves.\n", found);
}
float get_hierarchy_probability(float *x, tree *hier, int c, int stride)
{
float p = 1;
while(c >= 0){
p = p * x[c*stride];
c = hier->parent[c];
}
return p;
}
void hierarchy_predictions(float *predictions, int n, tree *hier, int only_leaves, int stride)
{
int j;
for(j = 0; j < n; ++j){
int parent = hier->parent[j];
if(parent >= 0){
predictions[j*stride] *= predictions[parent*stride];
}
}
if(only_leaves){
for(j = 0; j < n; ++j){
if(!hier->leaf[j]) predictions[j*stride] = 0;
}
}
}
int hierarchy_top_prediction(float *predictions, tree *hier, float thresh, int stride)
{
float p = 1;
int group = 0;
int i;
while(1){
float max = 0;
int max_i = 0;
for(i = 0; i < hier->group_size[group]; ++i){
int index = i + hier->group_offset[group];
float val = predictions[(i + hier->group_offset[group])*stride];
if(val > max){
max_i = index;
max = val;
}
}
if(p*max > thresh){
p = p*max;
group = hier->child[max_i];
if(hier->child[max_i] < 0) return max_i;
} else {
return hier->parent[hier->group_offset[group]];
}
}
return 0;
}
tree *read_tree(char *filename)
{
tree t = {0};
FILE *fp = fopen(filename, "r");
char *line;
int last_parent = -1;
int group_size = 0;
int groups = 0;
int n = 0;
while((line=fgetl(fp)) != 0){
char *id = calloc(256, sizeof(char));
int parent = -1;
sscanf(line, "%s %d", id, &parent);
t.parent = realloc(t.parent, (n+1)*sizeof(int));
t.parent[n] = parent;
t.child = realloc(t.child, (n+1)*sizeof(int));
t.child[n] = -1;
t.name = realloc(t.name, (n+1)*sizeof(char *));
t.name[n] = id;
if(parent != last_parent){
++groups;
t.group_offset = realloc(t.group_offset, groups * sizeof(int));
t.group_offset[groups - 1] = n - group_size;
t.group_size = realloc(t.group_size, groups * sizeof(int));
t.group_size[groups - 1] = group_size;
group_size = 0;
last_parent = parent;
}
t.group = realloc(t.group, (n+1)*sizeof(int));
t.group[n] = groups;
if (parent >= 0) {
t.child[parent] = groups;
}
++n;
++group_size;
}
++groups;
t.group_offset = realloc(t.group_offset, groups * sizeof(int));
t.group_offset[groups - 1] = n - group_size;
t.group_size = realloc(t.group_size, groups * sizeof(int));
t.group_size[groups - 1] = group_size;
t.n = n;
t.groups = groups;
t.leaf = calloc(n, sizeof(int));
int i;
for(i = 0; i < n; ++i) t.leaf[i] = 1;
for(i = 0; i < n; ++i) if(t.parent[i] >= 0) t.leaf[t.parent[i]] = 0;
fclose(fp);
tree *tree_ptr = calloc(1, sizeof(tree));
*tree_ptr = t;
//error(0);
return tree_ptr;
}