tweaked behavior of same_yaxis_scales to decrease cutoff at top

Author: jbelyeu

samplot/__init__.py

@@ -1,2 +1,2 @@
 #!/usr/bin/env python
-__version__ = "1.0.18"
+__version__ = "1.0.19"

samplot/samplot.py

@@ -315,7 +315,7 @@ def plot_coverage(
     cover_y_all = np.array(cover_y_all)
 
     if max_coverage > 0 and same_yaxis_labels:
-        max_plot_depth = max_coverage
+        max_plot_depth = max_coverage+5
     elif cover_y_all.max() > 3 * cover_y_all.mean():
         max_plot_depth = max(
             np.percentile(cover_y_all, 99.5), np.percentile(cover_y_all, 99.5)

test/func/samplot_test.sh

@@ -31,6 +31,21 @@ if [ $basic_operation ]; then
     assert_no_stderr
 fi
 
+rm -f $out_file_name
+run same_yaxis \
+    samplot plot \
+        -c $sv_chrm -s $sv_start -e $sv_end \
+        -b $bam_1 \
+        -o $out_file_name \
+        -t $sv_type \
+        --same_yaxis_scales
+if [ $basic_operation ]; then
+    assert_exit_code 0
+    assert_equal $out_file_name $( ls $out_file_name )
+    assert_no_stdout
+    assert_no_stderr
+fi
+
 out_file_name=$func_path"test_zoom.png"
 rm -f $out_file_name
 run basic_operation_zoom \