utils_lib/extract_parcellations.m at main · jchrispang/utils_lib · GitHub

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function parcellations = extract_parcellations(coverage, type)
% extract_parcellations.m
%
% Extract parcellations with certain coverage and type
%
% Inputs: coverage         : brain coverage (string)
%                            all, whole, or cortical
%         type             : type of parcellation (string)
%                            all, anatomical, or parcellation
%
% Output: parcellations    : parcellation names (cell)
%
% Original: James Pang, QIMR Berghofer, 2020

%%

if nargin<2
    type = 'all';
end
if nargin<1
    coverage = 'all';
end

if strcmpi(coverage, 'all') && strcmpi(type, 'all')

    parcellations = {'AAL2_120', 'AAL3_170', 'Brainnetome_246', ...
                     'Desikan_Killiany_84', 'Destrieux_164', 'HCPMMP1_360', ...
                     'QIMR_512', 'QIMR_513', 'Schaefer_Buckner_448', 'Schaefer_HarvardOxford_414', ...
                     'Gordon_333', 'Gordon333_TianS1_349', 'Gordon333_TianS2_365', 'Gordon333_TianS3_383', 'Gordon333_TianS4_387', ...
                     'Schaefer_100', 'Schaefer100_TianS1_116', 'Schaefer100_TianS2_132', 'Schaefer100_TianS3_150', 'Schaefer100_TianS4_154', ...
                     'Schaefer_200', 'Schaefer200_TianS1_216', 'Schaefer200_TianS2_232', 'Schaefer200_TianS3_250', 'Schaefer200_TianS4_254', ...
                     'Schaefer_400', 'Schaefer400_TianS1_416', 'Schaefer400_TianS2_432', 'Schaefer400_TianS3_450', 'Schaefer400_TianS4_454'};
elseif strcmpi(coverage, 'whole') && strcmpi(type, 'all')
    parcellations = {'AAL2_120', 'AAL3_170', 'Brainnetome_246', ...
                     'Desikan_Killiany_84', 'Destrieux_164', 'QIMR_512', ...
                     'QIMR_513', ...
                     'Schaefer_Buckner_448', 'Schaefer_HarvardOxford_414', ...
                     'Gordon333_TianS1_349', 'Gordon333_TianS2_365', ...
                     'Gordon333_TianS3_383', 'Gordon333_TianS4_387', ...
                     'Schaefer100_TianS1_116', 'Schaefer100_TianS2_132', ...
                     'Schaefer100_TianS3_150', 'Schaefer100_TianS4_154', ...
                     'Schaefer200_TianS1_216', 'Schaefer200_TianS2_232', ...
                     'Schaefer200_TianS3_250', 'Schaefer200_TianS4_254', ...
                     'Schaefer400_TianS1_416', 'Schaefer400_TianS2_432', ...
                     'Schaefer400_TianS3_450', 'Schaefer400_TianS4_454'};
elseif strcmpi(coverage, 'whole') && strcmpi(type, 'anatomical')
    parcellations = {'AAL2_120', 'AAL3_170', 'Brainnetome_246', ...
                     'Desikan_Killiany_84', 'Destrieux_164', 'QIMR_512', ...
                     'QIMR_513'};
elseif strcmpi(coverage, 'whole') && strcmpi(type, 'functional')
    parcellations = {'Schaefer_Buckner_448', 'Schaefer_HarvardOxford_414', ...
                     'Gordon333_TianS1_349', 'Gordon333_TianS2_365', ...
                     'Gordon333_TianS3_383', 'Gordon333_TianS4_387', ...
                     'Schaefer100_TianS1_116', 'Schaefer100_TianS2_132', ...
                     'Schaefer100_TianS3_150', 'Schaefer100_TianS4_154', ...
                     'Schaefer200_TianS1_216', 'Schaefer200_TianS2_232', ...
                     'Schaefer200_TianS3_250', 'Schaefer200_TianS4_254', ...
                     'Schaefer400_TianS1_416', 'Schaefer400_TianS2_432', ...
                     'Schaefer400_TianS3_450', 'Schaefer400_TianS4_454'};
elseif strcmpi(coverage, 'cortical') && strcmpi(type, 'all')
    parcellations = {'HCPMMP1_360', ...
                     'Gordon_333', 'Schaefer_100', 'Schaefer_200', ...
                     'Schaefer_400'};
elseif strcmpi(coverage, 'cortical') && strcmpi(type, 'anatomical')
    parcellations = {'HCPMMP1_360'};
elseif strcmpi(coverage, 'cortical') && strcmpi(type, 'functional')
    parcellations = {'Gordon_333', 'Schaefer_100', 'Schaefer_200', ...
                     'Schaefer_400'};
elseif strcmpi(coverage, 'all') && strcmpi(type, 'anatomical')
    parcellations = {'AAL2_120', 'AAL3_170', 'Brainnetome_246', ...
                     'Desikan_Killiany_84', 'Destrieux_164', 'QIMR_512', ...
                     'QIMR_513', ...
                     'HCPMMP1_360'};
elseif strcmpi(coverage, 'all') && strcmpi(type, 'functional')
    parcellations = {'Schaefer_Buckner_448', 'Schaefer_HarvardOxford_414', ...
                     'Gordon333_TianS1_349', 'Gordon333_TianS2_365', ...
                     'Gordon333_TianS3_383', 'Gordon333_TianS4_387', ...
                     'Schaefer100_TianS1_116', 'Schaefer100_TianS2_132', ...
                     'Schaefer100_TianS3_150', 'Schaefer100_TianS4_154', ...
                     'Schaefer200_TianS1_216', 'Schaefer200_TianS2_232', ...
                     'Schaefer200_TianS3_250', 'Schaefer200_TianS4_254', ...
                     'Schaefer400_TianS1_416', 'Schaefer400_TianS2_432', ...
                     'Schaefer400_TianS3_450', 'Schaefer400_TianS4_454', ...
                     'Gordon_333', 'Schaefer_100', 'Schaefer_200', ...
                     'Schaefer_400'};
end