Protein-Function-Annotation-Project/requirements.txt at main · lupusruber/Protein-Function-Annotation-Project · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
aiohttp==3.9.5
aiosignal==1.3.1
alembic==1.13.3
annotated-types==0.7.0
asttokens==2.4.1
async-timeout==4.0.3
attrs==23.2.0
beautifulsoup4==4.12.3
black==24.4.2
bs4==0.0.2
certifi==2024.6.2
cfgv==3.4.0
charset-normalizer==3.3.2
click==8.1.7
colorlog==6.8.2
comm==0.2.2
debugpy==1.8.2
decorator==5.1.1
dgl==2.4.0+cu121
distlib==0.3.8
exceptiongroup==1.2.1
executing==2.0.1
filelock==3.15.1
frozenlist==1.4.1
fsspec==2024.2.0
greenlet==3.1.1
identify==2.5.36
idna==3.7
ipykernel==6.29.5
ipython==8.26.0
jedi==0.19.1
Jinja2==3.1.3
joblib==1.4.2
jupyter_client==8.6.2
jupyter_core==5.7.2
littleutils==0.2.4
Mako==1.3.6
markdown-it-py==3.0.0
MarkupSafe==2.1.5
matplotlib-inline==0.1.7
mdurl==0.1.2
mpmath==1.3.0
multidict==6.0.5
mypy==1.10.0
mypy-extensions==1.0.0
nest-asyncio==1.6.0
networkx==3.2.1
nodeenv==1.9.1
numpy==1.26.3
nvidia-cublas-cu12==12.1.3.1
nvidia-cuda-cupti-cu12==12.1.105
nvidia-cuda-nvrtc-cu12==12.1.105
nvidia-cuda-runtime-cu12==12.1.105
nvidia-cudnn-cu12==8.9.2.26
nvidia-cufft-cu12==11.0.2.54
nvidia-curand-cu12==10.3.2.106
nvidia-cusolver-cu12==11.4.5.107
nvidia-cusparse-cu12==12.1.0.106
nvidia-nccl-cu12==2.20.5
nvidia-nvjitlink-cu12==12.1.105
nvidia-nvtx-cu12==12.1.105
ogb==1.3.6
optuna==4.0.0
outdated==0.2.2
packaging==24.1
pandas==2.2.2
parso==0.8.4
pathspec==0.12.1
pexpect==4.9.0
pillow==10.2.0
pip-search==0.0.12
platformdirs==4.2.2
pre-commit==3.7.1
prompt_toolkit==3.0.47
psutil==6.0.0
ptyprocess==0.7.0
pure-eval==0.2.2
pydantic==2.8.2
pydantic_core==2.20.1
pyg-lib==0.4.0+pt23cu121
Pygments==2.18.0
pyparsing==3.1.2
python-dateutil==2.9.0.post0
python-dotenv==1.0.1
pytz==2024.1
PyYAML==6.0.1
pyzmq==26.0.3
requests==2.32.3
rich==13.7.1
scikit-learn==1.5.0
scipy==1.13.1
six==1.16.0
soupsieve==2.5
SQLAlchemy==2.0.36
stack-data==0.6.3
sympy==1.12
threadpoolctl==3.5.0
tomli==2.0.1
torch==2.3.1+cu121
torch_geometric==2.5.3
torch_sparse==0.6.18+pt23cu121
torchaudio==2.3.1+cu121
torchdata==0.7.1
torchvision==0.18.1+cu121
tornado==6.4.1
tqdm==4.66.4
traitlets==5.14.3
triton==2.3.1
typing_extensions==4.12.2
tzdata==2024.1
urllib3==2.2.2
virtualenv==20.26.2
wcwidth==0.2.13
yarl==1.9.4