From 63eb5202dfa9f8f4a7165599fc3a75f9231498ed Mon Sep 17 00:00:00 2001 From: Michael Mansfield Date: Wed, 3 Mar 2021 17:50:33 +0900 Subject: [PATCH 1/3] Update luslab-nf-modules submodule --- modules/luslab-nf-modules | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/luslab-nf-modules b/modules/luslab-nf-modules index 9ff70c1..360cc91 160000 --- a/modules/luslab-nf-modules +++ b/modules/luslab-nf-modules @@ -1 +1 @@ -Subproject commit 9ff70c1701d4e12d84a844492153e18f7a552c77 +Subproject commit 360cc91159ea9c7b8fdfa9ef160aa8599f1bc2e9 From f267e55f124bfc3894a0314b6b9ce0145add71e0 Mon Sep 17 00:00:00 2001 From: Michael Mansfield Date: Wed, 3 Mar 2021 17:51:27 +0900 Subject: [PATCH 2/3] Properly rename submodule to subworkflow --- .../{submodule => subworkflow}/pairwise_genome_alignment/main.nf | 0 .../pairwise_genome_alignment/test/main.nf | 0 2 files changed, 0 insertions(+), 0 deletions(-) rename modules/local/{submodule => subworkflow}/pairwise_genome_alignment/main.nf (100%) rename modules/local/{submodule => subworkflow}/pairwise_genome_alignment/test/main.nf (100%) diff --git a/modules/local/submodule/pairwise_genome_alignment/main.nf b/modules/local/subworkflow/pairwise_genome_alignment/main.nf similarity index 100% rename from modules/local/submodule/pairwise_genome_alignment/main.nf rename to modules/local/subworkflow/pairwise_genome_alignment/main.nf diff --git a/modules/local/submodule/pairwise_genome_alignment/test/main.nf b/modules/local/subworkflow/pairwise_genome_alignment/test/main.nf similarity index 100% rename from modules/local/submodule/pairwise_genome_alignment/test/main.nf rename to modules/local/subworkflow/pairwise_genome_alignment/test/main.nf From 30faacd7e68df9d4358cffa27132dd28ed61069f Mon Sep 17 00:00:00 2001 From: Michael Mansfield Date: Wed, 3 Mar 2021 17:51:45 +0900 Subject: [PATCH 3/3] Update path in main.nf --- main.nf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/main.nf b/main.nf index b290d89..82fe45e 100644 --- a/main.nf +++ b/main.nf @@ -33,7 +33,7 @@ include { filtlong } from "./modules/luslab-nf-modules/tools/filtlong/main.nf" include { minionqc } from "./modules/luslab-nf-modules/tools/minionqc/main.nf" include { pairwise_genome_alignment as align_to_self ; - pairwise_genome_alignment as align_to_reference } from "./modules/local/submodule/pairwise_genome_alignment/main.nf" + pairwise_genome_alignment as align_to_reference } from "./modules/local/subworkflow/pairwise_genome_alignment/main.nf" include { porechop } from "./modules/luslab-nf-modules/tools/porechop/main.nf" include { tantan ; tantan_to_GFF3 } from "./modules/luslab-nf-modules/tools/tantan/main.nf"