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Recreate Prep_for_recon.m #34

@mesoOSU

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@mesoOSU

In the Matlab Mart2Aust, there is a function at "Mart2Aust/core/Prep_for_recon.m". It looks at a given input ebsd scan, reads in the phases, and attempts to intelligently reassign the phases to be (in order):

  1. Austenite
  2. Martensite
  3. Reconstructed Austenite (same CS as Austenite)
  4. Reconstructed Variants (same CS as Martensite)

We need a pythonic version that works with oris CrystalMaps. here is a link to a Onedrive with several example files to work with:
https://buckeyemailosu-my.sharepoint.com/personal/gerlt_1_buckeyemail_osu_edu/_layouts/15/onedrive.aspx?FolderCTID=0x01200034E8947926BCBB4AB0DE6B52291BDB9E&id=%2Fpersonal%2Fgerlt%5F1%5Fbuckeyemail%5Fosu%5Fedu%2FDocuments%2FMESO%5FOSU%2FHackathon%2FEBSD%2FAF96%5F321x%5Forix%5Fhdf5%5Fconversion

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