11_wrapup.qmd

# Wrap-up

## Project management

### RStudio projects

-   RStudio projects are an excellent way to keep all the files associated with a project (data, R scripts, results, figures, etc.) in one place on your computer.

-   This is one of the best ways to improve your workflow in RStudio, allowing you to:

    -   Create a project for each paper or data analysis project.
    -   Store data files in one place.
    -   Save, edit, and run scripts.
    -   Keep outputs such as plots and cleaned data.

-   To create a new project file, click `File > New Project`, then:

    ![](images/new_project_step1.png){fig-align="center" width="400"}

    ![](images/new_project_step2.png){fig-align="center" width="400"}

    ![](images/new_project_step3.png){fig-align="center" width="400"}

-   Call your project some version of "methodscamptest" and choose carefully where you wish to store the project on your machine.

::: callout-warning
If you don't store your project (and your other files, too!) somewhere reasonable, it will be hard to find it in the future! We recommend creating a clear organizational scheme for yourself early on.
:::

#### Using RStudio projects

When using an RStudio project, you should see its name in the top-right corner of RStudio, next to a light blue icon. You can check with R the folder in which your project operates:

```{r}
#| eval: false
getwd()
```

-   Now, as an example, let's run the following commands in the script editor and save the files into the project directory.

```{r}
#| eval: false

library(tidyverse)

my_plot <- ggplot(mtcars, aes(wt, mpg)) + 
  geom_point()

ggsave(plot = my_plot,
       filename = "plot_mtcars.pdf")

write_csv(mtcars, "mtcars.csv")
```

-   Quit RStudio and check out the folder associated with the project.

-   You should see the PDF file for the plot, the .csv file for the data, and the `.Rproj` file for the project itself.

-   Double-click the `.Rproj` file to reopen the project and pick up where you left off! Everything you need should be ready to go.

## Quarto documents and R Scripts

We have worked with .qmd scripts during Methods Camp. [Quarto](https://quarto.org/) is a very flexible format that allows code, math, and text. People use it to make reports (PDF or HTML), presentations, websites, etc. You can create a Quarto document from RStudio using `File > New File > Quarto Document`, and then compile it to its final form using the "Render" button.

You should also be aware of regular R scripts, with a .R extension. They can be created in RStudio using `File > New File > R Script`. They just allow code: to add comments, you need to preface them by the pound sign (`#`).

## Other software resources

### Overleaf

::: {style="float: right; position: relative; top: 0px; padding: 30px;"}
![](images/overleaf.png){width="250"}
:::

-   [Overleaf](https://www.overleaf.com/) is a collaborative cloud-based LaTeX editor designed for writing, editing, and publishing documents.

    -   LaTeX is a software used for typesetting technical documents. It is used widely in our discipline for the preparation for manuscripts to journals and other publishing venues.

-   UT Austin actually provides free access to Overleaf Professional to graduate students using your UT email. (The Professional accounts allows more collaborators on projects and other goodies.)

::: callout-note
## Exercise

Create an Overleaf Professional account using your UT email address. You can do so [here](https://www.overleaf.com/edu/utexas).
:::

::: callout-important

$$
\hat{\beta} = (X'X)^{-1}X'Y
$$

LaTeX is actually the markup language that the math in Quarto and this website! If you are curious about general syntax and commands, you can access [our repository](https://github.com/methodscamp/methodscamp.github.io) at any time to get a closer look.

:::

### Zotero

::: {style="float: right; position: relative; top: 0px; padding: 30px;"}
![](images/zotero_512x512x32.png){width="200"}
:::

-   Zotero is an open-source reference manager used to store, manage, and cite bibliographic references, such as books and articles.

-   When it is time to write, you can insert your sources directly into your paper as in-text citations via a word processor plugin, which generates a bibliography in your style of choice (e.g., APA). It works with Word, Google Docs, Overleaf, and RStudio.

    -   This can save a lot of time, especially when you have to change citation styles for submission to another journal.

-   You can download the software for free [here](https://www.zotero.org/).

::: callout-note
Zotero is one of many other reference managers out there. Alternatives include Mendeley and EndNote, among others. You should choose whatever option best suits your needs.
:::

::: callout-warning
### Consume AI wisely! 

* GPT can help with programming, but you must have domain knowledge.
* Interactions with ChatGPT are not exactly repeatable.
* GPT can help with expediting search from Google or Stack Overflow for troubleshooting, but it is not always correct.
* Read GPT’s explanation carefully to make sure it does what you want. It is a tool to help you learn, not to do the work for you!
* **Try to type out the generated code yourself, do NOT copy and paste**
* In your problem sets, always acknowledge that you have consulted AI for support.  
* When errors occur, copy the error messages and paste them into GPT for troubleshooting.
* You can continue with follow-up instructions to improve the results.
* In case of a catch-22 situation, use your domain expertise.
:::

## Methods at UT

### Required methods courses

-   Scope and Methods of Political Science

-   Statistics I (Statistics/linear regression)

-   Statistics II (Linear regression and more)

-   Statistics III (Maximum likelihood estimation)

    +  Only required if your major field is methods

### Other methods courses

-   **Statistics / Econometrics / Machine Learning:**

    -   Causal Inference
    -   Bayesian Statistics
    -   Math Methods for Political Analysis
    -   Time Series and Panel Data
    -   Panel and Multilevel Analysis
    -   Network Analysis
    -   Machine Learning in Political Science
    -   Making Big Data

-   **Formal Theory**

    -   Intro to Formal Political Analysis
    -   Formal Political Analysis II
    -   Formal Theories of International Relations

-   **Everything else**

    -   Conceptualization and Measurement
    -   Experimental Methods in Political Science
    -   Qualitative Methods
    -   Seminar in Field Experiments

### Other departments at UT

You can also take courses through the Economics, Business (IROM), Sociology, Mathematics, or Statistics (SDS) departments.

- [M.S. in Statistics](https://stat.utexas.edu/academics/master-science-statistics)

- Software and Topic Short Courses at SDS (see their [Events](https://stat.utexas.edu/events) page): R, Python, Stata, etc.

### Methods Fellow

The Methods Fellow is a grad student who serves as a Methods TA for all other UT Gov grad students.

- Holds office hours
- Hosts a Methods Co-Working Hour
- Organizes workshops

### Methods summer programs

-   [ICPSR](https://www.icpsr.umich.edu/web/pages/) (Inter-university Consortium for Political and Social Research)

    -   Ann Arbor, Michigan

-   [IQMR](https://www.maxwell.syr.edu/research/center-for-qualitative-and-multi-method-inquiry/institute-for-qualitative-multi-method-research) (Institute for Qualitative and Multi-Method Research)

    -   Syracuse, NY
    
-   [EITM](https://eitminstitute.org/) (Empirical Implications of Theoretical Models)

    -   Various locations

### More methods camps!

- [UT Methods Camp Website](https://methodscamp.github.io/)

    + Check out the PDF download!
    
- [Harvard Math Prefresher](https://iqss.github.io/prefresher/)

- [Northwestern Math Camp (2022)](https://github.com/NUpolisci/NU-math-camp?tab=readme-ov-file)

- [Duke Math Camp (2019)](https://people.duke.edu/~das76/Math_Camp_Info_2019.pdf)

    + Make sure to follow the links for the videos, etc.