It looks like the resource bundles are using a version of BWA that creates both the forward and reverse indexes (.pac, .rpac) whereas BWA has for a long time move to using on a single direction index. This likely means that when creating custom indexes, we have to use a very old version of bwa to work. Any idea on how to improve this?
It looks like the resource bundles are using a version of BWA that creates both the forward and reverse indexes (
.pac, .rpac) whereas BWA has for a long time move to using on a single direction index. This likely means that when creating custom indexes, we have to use a very old version of bwa to work. Any idea on how to improve this?