Added first version. this refs #326

Author: JeanBilheux

notebooks/MARS_sample_cataloging.ipynb

@@ -0,0 +1,104 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "[![Notebook Tutorial](__code/__all/notebook_tutorial.png)](https://neutronimaging.ornl.gov/tutorials/imaging-notebooks/mars_sample_cataloging/)\n",
+    "\n",
+    "<img src='__docs/__all/notebook_rules.png' />"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "# Select Your IPTS "
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "from __code.mars_sample_cataloging.main import MarsSampleCataloging\n",
+    "\n",
+    "from __code import system\n",
+    "system.System.select_working_dir(notebook='mars_sample_cataloging', ipts=\"IPTS-23788\", instrument_to_exclude=[\"VENUS\", \"SNAP\"])\n",
+    "from __code.__all import custom_style\n",
+    "custom_style.style()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {
+    "run_control": {
+     "frozen": false,
+     "read_only": false
+    }
+   },
+   "source": [
+    "## Select Output Folder "
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "o_cataloging = MarsSampleCataloging(working_dir=system.System.get_working_dir())\n",
+    "o_cataloging.select_output_folder()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  }
+ ],
+ "metadata": {
+  "anaconda-cloud": {},
+  "kernelspec": {
+   "display_name": "default",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.12.12"
+  },
+  "toc": {
+   "colors": {
+    "hover_highlight": "#DAA520",
+    "running_highlight": "#FF0000",
+    "selected_highlight": "#FFD700"
+   },
+   "moveMenuLeft": true,
+   "nav_menu": {
+    "height": "210px",
+    "width": "252px"
+   },
+   "navigate_menu": true,
+   "number_sections": true,
+   "sideBar": true,
+   "threshold": 4,
+   "toc_cell": false,
+   "toc_section_display": "block",
+   "toc_window_display": false
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 1
+}

notebooks/__code/mars_sample_cataloging/config.py

@@ -0,0 +1,6 @@
+list_metadata_label_to_keep = ['65010', #FileNameStr:human_cells_D20 
+                               '65015', #SampleDescStr: human immportalized THP-1 macrophage cells
+                               '65000', #945533671.6768605   nb: this is the acquistion timestamp in seconds since epoch, which can be converted to a human readable date using datetime.fromtimestamp() function 
+                               'JEOL_Header', #ExposureTime:70.000000
+                               ]
+DEBUG = False