timepix chips correction applied to ob. this refs #328

Author: JeanBilheux

notebooks/A_TABLE_OF_CONTENTS.ipynb

@@ -5,9 +5,7 @@
    "id": "0",
    "metadata": {},
    "source": [
-    "# Table of contents\n",
-    "\n",
-    "Last release: 09/09/22 09:30"
+    "# Table of contents"
    ]
   },
   {

notebooks/__code/normalization_tof/normalization_for_timepix1_timepix3.py

@@ -231,9 +231,9 @@ def normalization_with_list_of_full_path(
     logging.info(f"number of zeros in ob_data_combined data: {np.sum(ob_data_combined == 0)} ")
 
     if correct_chips_alignment_flag:
-        correct_chips_alignment(ob_data_combined, 
-                                correct_chips_alignment_config, 
-                                verbose=verbose)
+        ob_data_combined = correct_chips_alignment(ob_data_combined, 
+                                                   correct_chips_alignment_config, 
+                                                   verbose=verbose)
 
     ob_data_combined_for_spectrum = calculate_ob_data_combined_used_by_spectrum_normalization(roi=roi,
                                                                                  ob_data_combined=ob_data_combined,