Description of feature
Hi,
I would like to propose adding an option to the pipeline that allows for the merging of runs for the same sample, similar to the functionality provided in the taxprofiler pipeline. In taxprofiler, fastq files from multiple runs can be concatenated before profiling based on the sample identifier (--perform_runmerging parameter).
Implementing a similar feature would make using the clean reads on downstream analyses that don't allow for this very straighforward.
Thank you for considering this request.
Description of feature
Hi,
I would like to propose adding an option to the pipeline that allows for the merging of runs for the same sample, similar to the functionality provided in the
taxprofilerpipeline. Intaxprofiler, fastq files from multiple runs can be concatenated before profiling based on the sample identifier (--perform_runmergingparameter).Implementing a similar feature would make using the clean reads on downstream analyses that don't allow for this very straighforward.
Thank you for considering this request.