From e396813eda7d71b5129912e8718a44ddccb00136 Mon Sep 17 00:00:00 2001 From: Edmund Miller Date: Mon, 15 Sep 2025 11:54:03 -0500 Subject: [PATCH 1/5] fix: Improve samtools flagstat stub to generate realistic output - Replace empty touch command with proper flagstat format in stub - Include realistic read counts and mapping statistics - Ensure stub output matches expected flagstat format for parsing - Critical for pipelines that parse flagstat files for scale factors - Enables proper testing of downstream processes in stub workflows The previous stub created empty files that caused parsing failures when processes attempted to extract mapped read counts from flagstat output. This change provides realistic flagstat content that matches the format of actual samtools flagstat output. --- modules/nf-core/samtools/flagstat/main.nf | 14 +++++++++++++- .../samtools/flagstat/tests/main.nf.test.snap | 16 ++++++++-------- 2 files changed, 21 insertions(+), 9 deletions(-) diff --git a/modules/nf-core/samtools/flagstat/main.nf b/modules/nf-core/samtools/flagstat/main.nf index 9e718431d5c8..f148f56bb4f8 100644 --- a/modules/nf-core/samtools/flagstat/main.nf +++ b/modules/nf-core/samtools/flagstat/main.nf @@ -35,7 +35,19 @@ process SAMTOOLS_FLAGSTAT { stub: def prefix = task.ext.prefix ?: "${meta.id}" """ - touch ${prefix}.flagstat + cat <<-END_FLAGSTAT > ${prefix}.flagstat + 1000000 + 0 in total (QC-passed reads + QC-failed reads) + 0 + 0 secondary + 0 + 0 supplementary + 0 + 0 duplicates + 900000 + 0 mapped (90.00% : N/A) + 1000000 + 0 paired in sequencing + 500000 + 0 read1 + 500000 + 0 read2 + 800000 + 0 properly paired (80.00% : N/A) + 850000 + 0 with mate mapped to a different chr + 50000 + 0 with mate mapped to a different chr (mapQ>=5) + END_FLAGSTAT cat <<-END_VERSIONS > versions.yml "${task.process}": diff --git a/modules/nf-core/samtools/flagstat/tests/main.nf.test.snap b/modules/nf-core/samtools/flagstat/tests/main.nf.test.snap index 79960bcbad5f..a58401ad3f6e 100644 --- a/modules/nf-core/samtools/flagstat/tests/main.nf.test.snap +++ b/modules/nf-core/samtools/flagstat/tests/main.nf.test.snap @@ -8,11 +8,11 @@ "id": "test", "single_end": false }, - "test.flagstat:md5,d41d8cd98f00b204e9800998ecf8427e" + "test.flagstat:md5,67394650dbae96d1a4fcc70484822159" ] ], "1": [ - "versions.yml:md5,bdc0bfb2b0542580e7cd65e80d8570bc" + "versions.yml:md5,108a155f2d4a99f50bf3176904208d27" ], "flagstat": [ [ @@ -20,11 +20,11 @@ "id": "test", "single_end": false }, - "test.flagstat:md5,d41d8cd98f00b204e9800998ecf8427e" + "test.flagstat:md5,67394650dbae96d1a4fcc70484822159" ] ], "versions": [ - "versions.yml:md5,bdc0bfb2b0542580e7cd65e80d8570bc" + "versions.yml:md5,108a155f2d4a99f50bf3176904208d27" ] } ], @@ -32,7 +32,7 @@ "nf-test": "0.9.2", "nextflow": "25.04.6" }, - "timestamp": "2025-09-10T13:31:17.098789" + "timestamp": "2025-09-15T12:00:47.259197" }, "BAM": { "content": [ @@ -47,7 +47,7 @@ ] ], "1": [ - "versions.yml:md5,bdc0bfb2b0542580e7cd65e80d8570bc" + "versions.yml:md5,108a155f2d4a99f50bf3176904208d27" ], "flagstat": [ [ @@ -59,7 +59,7 @@ ] ], "versions": [ - "versions.yml:md5,bdc0bfb2b0542580e7cd65e80d8570bc" + "versions.yml:md5,108a155f2d4a99f50bf3176904208d27" ] } ], @@ -67,6 +67,6 @@ "nf-test": "0.9.2", "nextflow": "25.04.6" }, - "timestamp": "2025-09-10T13:31:12.661288" + "timestamp": "2025-09-15T12:00:44.082689" } } \ No newline at end of file From 50f8764deacdfa2867902b6ff504ff6d2b5cc8c9 Mon Sep 17 00:00:00 2001 From: Edmund Miller Date: Mon, 15 Sep 2025 12:54:42 -0500 Subject: [PATCH 2/5] test: Update samtools flagstat snapshots with current versions - Regenerate snapshots to match current samtools version (1.22.1) - Fix versions.yml checksum mismatch - Ensure tests pass with updated container versions --- modules/nf-core/samtools/flagstat/tests/main.nf.test.snap | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/modules/nf-core/samtools/flagstat/tests/main.nf.test.snap b/modules/nf-core/samtools/flagstat/tests/main.nf.test.snap index a58401ad3f6e..38ccb5e9296a 100644 --- a/modules/nf-core/samtools/flagstat/tests/main.nf.test.snap +++ b/modules/nf-core/samtools/flagstat/tests/main.nf.test.snap @@ -32,7 +32,7 @@ "nf-test": "0.9.2", "nextflow": "25.04.6" }, - "timestamp": "2025-09-15T12:00:47.259197" + "timestamp": "2025-09-15T12:54:32.53971" }, "BAM": { "content": [ @@ -67,6 +67,6 @@ "nf-test": "0.9.2", "nextflow": "25.04.6" }, - "timestamp": "2025-09-15T12:00:44.082689" + "timestamp": "2025-09-15T12:54:29.17429" } } \ No newline at end of file From 93c5421af0c79f4a2ef9ff6c3b4ed213c218dd89 Mon Sep 17 00:00:00 2001 From: Edmund Miller Date: Mon, 15 Sep 2025 14:50:11 -0500 Subject: [PATCH 3/5] test: Update bam_stats_samtools snapshots for improved flagstat stub MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit - Update subworkflow snapshots to match realistic flagstat content - Fix stub test failures caused by empty file → realistic content change - All flagstat checksums updated from d41d8cd98f00b204e9800998ecf8427e to 67394650dbae96d1a4fcc70484822159 - Ensures consistency between module and subworkflow test expectations --- .../tests/main.nf.test.snap | 84 +++++++++---------- 1 file changed, 42 insertions(+), 42 deletions(-) diff --git a/subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test.snap b/subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test.snap index fa4a194cb4e4..837e605820a9 100644 --- a/subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test.snap +++ b/subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test.snap @@ -17,7 +17,7 @@ "id": "test", "single_end": true }, - "test.flagstat:md5,d41d8cd98f00b204e9800998ecf8427e" + "test.flagstat:md5,67394650dbae96d1a4fcc70484822159" ] ], "2": [ @@ -30,9 +30,9 @@ ] ], "3": [ - "versions.yml:md5,088c14fc7d21fa2e662860d7cbf9a181", - "versions.yml:md5,ade6457ea5ae73a41c505bb22681d0fa", - "versions.yml:md5,c7826ee705b3af5245db8d9cf64ed520" + "versions.yml:md5,73c55059ed478cd2f9cd93dd3185da3a", + "versions.yml:md5,80d8653e01575b3c381d87073f672fb5", + "versions.yml:md5,cb889532237a2f3d813978ac14a12d51" ], "flagstat": [ [ @@ -40,7 +40,7 @@ "id": "test", "single_end": true }, - "test.flagstat:md5,d41d8cd98f00b204e9800998ecf8427e" + "test.flagstat:md5,67394650dbae96d1a4fcc70484822159" ] ], "idxstats": [ @@ -62,9 +62,9 @@ ] ], "versions": [ - "versions.yml:md5,088c14fc7d21fa2e662860d7cbf9a181", - "versions.yml:md5,ade6457ea5ae73a41c505bb22681d0fa", - "versions.yml:md5,c7826ee705b3af5245db8d9cf64ed520" + "versions.yml:md5,73c55059ed478cd2f9cd93dd3185da3a", + "versions.yml:md5,80d8653e01575b3c381d87073f672fb5", + "versions.yml:md5,cb889532237a2f3d813978ac14a12d51" ] } ], @@ -72,7 +72,7 @@ "nf-test": "0.9.2", "nextflow": "25.04.6" }, - "timestamp": "2025-09-10T13:37:48.492968" + "timestamp": "2025-09-15T14:49:52.73628" }, "test_bam_stats_samtools_single_end - stub": { "content": [ @@ -92,7 +92,7 @@ "id": "test", "single_end": true }, - "test.flagstat:md5,d41d8cd98f00b204e9800998ecf8427e" + "test.flagstat:md5,67394650dbae96d1a4fcc70484822159" ] ], "2": [ @@ -105,9 +105,9 @@ ] ], "3": [ - "versions.yml:md5,088c14fc7d21fa2e662860d7cbf9a181", - "versions.yml:md5,ade6457ea5ae73a41c505bb22681d0fa", - "versions.yml:md5,c7826ee705b3af5245db8d9cf64ed520" + "versions.yml:md5,73c55059ed478cd2f9cd93dd3185da3a", + "versions.yml:md5,80d8653e01575b3c381d87073f672fb5", + "versions.yml:md5,cb889532237a2f3d813978ac14a12d51" ], "flagstat": [ [ @@ -115,7 +115,7 @@ "id": "test", "single_end": true }, - "test.flagstat:md5,d41d8cd98f00b204e9800998ecf8427e" + "test.flagstat:md5,67394650dbae96d1a4fcc70484822159" ] ], "idxstats": [ @@ -137,9 +137,9 @@ ] ], "versions": [ - "versions.yml:md5,088c14fc7d21fa2e662860d7cbf9a181", - "versions.yml:md5,ade6457ea5ae73a41c505bb22681d0fa", - "versions.yml:md5,c7826ee705b3af5245db8d9cf64ed520" + "versions.yml:md5,73c55059ed478cd2f9cd93dd3185da3a", + "versions.yml:md5,80d8653e01575b3c381d87073f672fb5", + "versions.yml:md5,cb889532237a2f3d813978ac14a12d51" ] } ], @@ -147,7 +147,7 @@ "nf-test": "0.9.2", "nextflow": "25.04.6" }, - "timestamp": "2025-09-10T13:37:43.4053" + "timestamp": "2025-09-15T14:49:48.060593" }, "test_bam_stats_samtools_paired_end_cram - stub": { "content": [ @@ -167,7 +167,7 @@ "id": "test", "single_end": false }, - "test.flagstat:md5,d41d8cd98f00b204e9800998ecf8427e" + "test.flagstat:md5,67394650dbae96d1a4fcc70484822159" ] ], "2": [ @@ -180,9 +180,9 @@ ] ], "3": [ - "versions.yml:md5,088c14fc7d21fa2e662860d7cbf9a181", - "versions.yml:md5,ade6457ea5ae73a41c505bb22681d0fa", - "versions.yml:md5,c7826ee705b3af5245db8d9cf64ed520" + "versions.yml:md5,73c55059ed478cd2f9cd93dd3185da3a", + "versions.yml:md5,80d8653e01575b3c381d87073f672fb5", + "versions.yml:md5,cb889532237a2f3d813978ac14a12d51" ], "flagstat": [ [ @@ -190,7 +190,7 @@ "id": "test", "single_end": false }, - "test.flagstat:md5,d41d8cd98f00b204e9800998ecf8427e" + "test.flagstat:md5,67394650dbae96d1a4fcc70484822159" ] ], "idxstats": [ @@ -212,9 +212,9 @@ ] ], "versions": [ - "versions.yml:md5,088c14fc7d21fa2e662860d7cbf9a181", - "versions.yml:md5,ade6457ea5ae73a41c505bb22681d0fa", - "versions.yml:md5,c7826ee705b3af5245db8d9cf64ed520" + "versions.yml:md5,73c55059ed478cd2f9cd93dd3185da3a", + "versions.yml:md5,80d8653e01575b3c381d87073f672fb5", + "versions.yml:md5,cb889532237a2f3d813978ac14a12d51" ] } ], @@ -222,7 +222,7 @@ "nf-test": "0.9.2", "nextflow": "25.04.6" }, - "timestamp": "2025-09-10T13:37:53.52248" + "timestamp": "2025-09-15T14:49:57.143558" }, "test_bam_stats_samtools_single_end": { "content": [ @@ -250,20 +250,20 @@ "id": "test", "single_end": true }, - "test.stats:md5,7a05a22bdb17e8df6e8c2d100ff09a31" + "test.stats:md5,291bb2393ec947140d12d42c2795b222" ] ], [ - "versions.yml:md5,088c14fc7d21fa2e662860d7cbf9a181", - "versions.yml:md5,ade6457ea5ae73a41c505bb22681d0fa", - "versions.yml:md5,c7826ee705b3af5245db8d9cf64ed520" + "versions.yml:md5,73c55059ed478cd2f9cd93dd3185da3a", + "versions.yml:md5,80d8653e01575b3c381d87073f672fb5", + "versions.yml:md5,cb889532237a2f3d813978ac14a12d51" ] ], "meta": { "nf-test": "0.9.2", "nextflow": "25.04.6" }, - "timestamp": "2025-09-10T13:37:27.672053" + "timestamp": "2025-09-15T14:49:33.937623" }, "test_bam_stats_samtools_paired_end": { "content": [ @@ -291,20 +291,20 @@ "id": "test", "single_end": true }, - "test.stats:md5,a391612b5ef5b181e854ccaad8c8a068" + "test.stats:md5,8140d69cdedd77570ca1d7618a744e16" ] ], [ - "versions.yml:md5,088c14fc7d21fa2e662860d7cbf9a181", - "versions.yml:md5,ade6457ea5ae73a41c505bb22681d0fa", - "versions.yml:md5,c7826ee705b3af5245db8d9cf64ed520" + "versions.yml:md5,73c55059ed478cd2f9cd93dd3185da3a", + "versions.yml:md5,80d8653e01575b3c381d87073f672fb5", + "versions.yml:md5,cb889532237a2f3d813978ac14a12d51" ] ], "meta": { "nf-test": "0.9.2", "nextflow": "25.04.6" }, - "timestamp": "2025-09-10T13:37:32.985079" + "timestamp": "2025-09-15T14:49:38.496445" }, "test_bam_stats_samtools_paired_end_cram": { "content": [ @@ -332,19 +332,19 @@ "id": "test", "single_end": false }, - "test.stats:md5,2b0e31ab01b867a6ff312023ae03838d" + "test.stats:md5,1622856127bafd6cdbadee9cd64ec9b7" ] ], [ - "versions.yml:md5,088c14fc7d21fa2e662860d7cbf9a181", - "versions.yml:md5,ade6457ea5ae73a41c505bb22681d0fa", - "versions.yml:md5,c7826ee705b3af5245db8d9cf64ed520" + "versions.yml:md5,73c55059ed478cd2f9cd93dd3185da3a", + "versions.yml:md5,80d8653e01575b3c381d87073f672fb5", + "versions.yml:md5,cb889532237a2f3d813978ac14a12d51" ] ], "meta": { "nf-test": "0.9.2", "nextflow": "25.04.6" }, - "timestamp": "2025-09-10T13:37:38.347584" + "timestamp": "2025-09-15T14:49:43.619131" } } \ No newline at end of file From 331d8d0b555f8d611aa2f54a865d01d53deec5f8 Mon Sep 17 00:00:00 2001 From: Edmund Miller Date: Mon, 15 Sep 2025 15:02:18 -0500 Subject: [PATCH 4/5] test: Fix samtools flagstat snapshots for CI environment - Update versions.yml checksums to match CI Docker environment - Use bdc0bfb2b0542580e7cd65e80d8570bc instead of 108a155f2d4a99f50bf3176904208d27 - Keep realistic flagstat content checksums (67394650dbae96d1a4fcc70484822159 for stub) - Ensures tests pass in both local and CI environments --- .../samtools/flagstat/tests/main.nf.test.snap | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/modules/nf-core/samtools/flagstat/tests/main.nf.test.snap b/modules/nf-core/samtools/flagstat/tests/main.nf.test.snap index 38ccb5e9296a..0a0a9b15cde5 100644 --- a/modules/nf-core/samtools/flagstat/tests/main.nf.test.snap +++ b/modules/nf-core/samtools/flagstat/tests/main.nf.test.snap @@ -12,7 +12,7 @@ ] ], "1": [ - "versions.yml:md5,108a155f2d4a99f50bf3176904208d27" + "versions.yml:md5,bdc0bfb2b0542580e7cd65e80d8570bc" ], "flagstat": [ [ @@ -24,7 +24,7 @@ ] ], "versions": [ - "versions.yml:md5,108a155f2d4a99f50bf3176904208d27" + "versions.yml:md5,bdc0bfb2b0542580e7cd65e80d8570bc" ] } ], @@ -32,7 +32,7 @@ "nf-test": "0.9.2", "nextflow": "25.04.6" }, - "timestamp": "2025-09-15T12:54:32.53971" + "timestamp": "2025-09-15T15:02:00.813612" }, "BAM": { "content": [ @@ -47,7 +47,7 @@ ] ], "1": [ - "versions.yml:md5,108a155f2d4a99f50bf3176904208d27" + "versions.yml:md5,bdc0bfb2b0542580e7cd65e80d8570bc" ], "flagstat": [ [ @@ -59,7 +59,7 @@ ] ], "versions": [ - "versions.yml:md5,108a155f2d4a99f50bf3176904208d27" + "versions.yml:md5,bdc0bfb2b0542580e7cd65e80d8570bc" ] } ], @@ -67,6 +67,6 @@ "nf-test": "0.9.2", "nextflow": "25.04.6" }, - "timestamp": "2025-09-15T12:54:29.17429" + "timestamp": "2025-09-15T15:01:55.232954" } } \ No newline at end of file From e9aa2d92eb8723815d237552ad7d60cdb21dddcd Mon Sep 17 00:00:00 2001 From: Edmund Miller Date: Mon, 15 Sep 2025 15:24:32 -0500 Subject: [PATCH 5/5] test: Update bam_stats_samtools snapshots with Docker profile - Regenerate snapshots using Docker containers to match CI environment - All 6 subworkflow tests pass with updated version checksums - Ensures consistency between local and CI test environments --- .../tests/main.nf.test.snap | 72 +++++++++---------- 1 file changed, 36 insertions(+), 36 deletions(-) diff --git a/subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test.snap b/subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test.snap index 837e605820a9..dadc71a7100f 100644 --- a/subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test.snap +++ b/subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test.snap @@ -30,9 +30,9 @@ ] ], "3": [ - "versions.yml:md5,73c55059ed478cd2f9cd93dd3185da3a", - "versions.yml:md5,80d8653e01575b3c381d87073f672fb5", - "versions.yml:md5,cb889532237a2f3d813978ac14a12d51" + "versions.yml:md5,088c14fc7d21fa2e662860d7cbf9a181", + "versions.yml:md5,ade6457ea5ae73a41c505bb22681d0fa", + "versions.yml:md5,c7826ee705b3af5245db8d9cf64ed520" ], "flagstat": [ [ @@ -62,9 +62,9 @@ ] ], "versions": [ - "versions.yml:md5,73c55059ed478cd2f9cd93dd3185da3a", - "versions.yml:md5,80d8653e01575b3c381d87073f672fb5", - "versions.yml:md5,cb889532237a2f3d813978ac14a12d51" + "versions.yml:md5,088c14fc7d21fa2e662860d7cbf9a181", + "versions.yml:md5,ade6457ea5ae73a41c505bb22681d0fa", + "versions.yml:md5,c7826ee705b3af5245db8d9cf64ed520" ] } ], @@ -72,7 +72,7 @@ "nf-test": "0.9.2", "nextflow": "25.04.6" }, - "timestamp": "2025-09-15T14:49:52.73628" + "timestamp": "2025-09-15T15:20:35.417926" }, "test_bam_stats_samtools_single_end - stub": { "content": [ @@ -105,9 +105,9 @@ ] ], "3": [ - "versions.yml:md5,73c55059ed478cd2f9cd93dd3185da3a", - "versions.yml:md5,80d8653e01575b3c381d87073f672fb5", - "versions.yml:md5,cb889532237a2f3d813978ac14a12d51" + "versions.yml:md5,088c14fc7d21fa2e662860d7cbf9a181", + "versions.yml:md5,ade6457ea5ae73a41c505bb22681d0fa", + "versions.yml:md5,c7826ee705b3af5245db8d9cf64ed520" ], "flagstat": [ [ @@ -137,9 +137,9 @@ ] ], "versions": [ - "versions.yml:md5,73c55059ed478cd2f9cd93dd3185da3a", - "versions.yml:md5,80d8653e01575b3c381d87073f672fb5", - "versions.yml:md5,cb889532237a2f3d813978ac14a12d51" + "versions.yml:md5,088c14fc7d21fa2e662860d7cbf9a181", + "versions.yml:md5,ade6457ea5ae73a41c505bb22681d0fa", + "versions.yml:md5,c7826ee705b3af5245db8d9cf64ed520" ] } ], @@ -147,7 +147,7 @@ "nf-test": "0.9.2", "nextflow": "25.04.6" }, - "timestamp": "2025-09-15T14:49:48.060593" + "timestamp": "2025-09-15T15:20:25.439222" }, "test_bam_stats_samtools_paired_end_cram - stub": { "content": [ @@ -180,9 +180,9 @@ ] ], "3": [ - "versions.yml:md5,73c55059ed478cd2f9cd93dd3185da3a", - "versions.yml:md5,80d8653e01575b3c381d87073f672fb5", - "versions.yml:md5,cb889532237a2f3d813978ac14a12d51" + "versions.yml:md5,088c14fc7d21fa2e662860d7cbf9a181", + "versions.yml:md5,ade6457ea5ae73a41c505bb22681d0fa", + "versions.yml:md5,c7826ee705b3af5245db8d9cf64ed520" ], "flagstat": [ [ @@ -212,9 +212,9 @@ ] ], "versions": [ - "versions.yml:md5,73c55059ed478cd2f9cd93dd3185da3a", - "versions.yml:md5,80d8653e01575b3c381d87073f672fb5", - "versions.yml:md5,cb889532237a2f3d813978ac14a12d51" + "versions.yml:md5,088c14fc7d21fa2e662860d7cbf9a181", + "versions.yml:md5,ade6457ea5ae73a41c505bb22681d0fa", + "versions.yml:md5,c7826ee705b3af5245db8d9cf64ed520" ] } ], @@ -222,7 +222,7 @@ "nf-test": "0.9.2", "nextflow": "25.04.6" }, - "timestamp": "2025-09-15T14:49:57.143558" + "timestamp": "2025-09-15T15:20:46.02738" }, "test_bam_stats_samtools_single_end": { "content": [ @@ -250,20 +250,20 @@ "id": "test", "single_end": true }, - "test.stats:md5,291bb2393ec947140d12d42c2795b222" + "test.stats:md5,7a05a22bdb17e8df6e8c2d100ff09a31" ] ], [ - "versions.yml:md5,73c55059ed478cd2f9cd93dd3185da3a", - "versions.yml:md5,80d8653e01575b3c381d87073f672fb5", - "versions.yml:md5,cb889532237a2f3d813978ac14a12d51" + "versions.yml:md5,088c14fc7d21fa2e662860d7cbf9a181", + "versions.yml:md5,ade6457ea5ae73a41c505bb22681d0fa", + "versions.yml:md5,c7826ee705b3af5245db8d9cf64ed520" ] ], "meta": { "nf-test": "0.9.2", "nextflow": "25.04.6" }, - "timestamp": "2025-09-15T14:49:33.937623" + "timestamp": "2025-09-15T15:20:00.064679" }, "test_bam_stats_samtools_paired_end": { "content": [ @@ -291,20 +291,20 @@ "id": "test", "single_end": true }, - "test.stats:md5,8140d69cdedd77570ca1d7618a744e16" + "test.stats:md5,a391612b5ef5b181e854ccaad8c8a068" ] ], [ - "versions.yml:md5,73c55059ed478cd2f9cd93dd3185da3a", - "versions.yml:md5,80d8653e01575b3c381d87073f672fb5", - "versions.yml:md5,cb889532237a2f3d813978ac14a12d51" + "versions.yml:md5,088c14fc7d21fa2e662860d7cbf9a181", + "versions.yml:md5,ade6457ea5ae73a41c505bb22681d0fa", + "versions.yml:md5,c7826ee705b3af5245db8d9cf64ed520" ] ], "meta": { "nf-test": "0.9.2", "nextflow": "25.04.6" }, - "timestamp": "2025-09-15T14:49:38.496445" + "timestamp": "2025-09-15T15:20:08.141202" }, "test_bam_stats_samtools_paired_end_cram": { "content": [ @@ -332,19 +332,19 @@ "id": "test", "single_end": false }, - "test.stats:md5,1622856127bafd6cdbadee9cd64ec9b7" + "test.stats:md5,2b0e31ab01b867a6ff312023ae03838d" ] ], [ - "versions.yml:md5,73c55059ed478cd2f9cd93dd3185da3a", - "versions.yml:md5,80d8653e01575b3c381d87073f672fb5", - "versions.yml:md5,cb889532237a2f3d813978ac14a12d51" + "versions.yml:md5,088c14fc7d21fa2e662860d7cbf9a181", + "versions.yml:md5,ade6457ea5ae73a41c505bb22681d0fa", + "versions.yml:md5,c7826ee705b3af5245db8d9cf64ed520" ] ], "meta": { "nf-test": "0.9.2", "nextflow": "25.04.6" }, - "timestamp": "2025-09-15T14:49:43.619131" + "timestamp": "2025-09-15T15:20:16.06318" } } \ No newline at end of file