From ae847e958e152450b52be32b3bed4741ce813e91 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Rodrigo=20Mart=C3=ADn?= <contact@rodrigomartin.dev>
Date: Thu, 12 Jan 2023 14:19:39 +0100
Subject: [PATCH] feat: Add Dockerfile

This allows the users to create their own docker instances of Shimmer.
---
 Dockerfile | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)
 create mode 100644 Dockerfile

diff --git a/Dockerfile b/Dockerfile
new file mode 100644
index 0000000..f706b3e
--- /dev/null
+++ b/Dockerfile
@@ -0,0 +1,22 @@
+FROM ubuntu:20.04
+
+ARG DEBIAN_FRONTEND=noninteractive
+
+# Copy content from host to container
+RUN mkdir /shimmer
+COPY . /shimmer
+
+RUN apt-get update && apt-get install -y perl r-base samtools
+
+RUN perl -MCPAN -e 'CPAN::Shell->install("Module::Build")'
+
+# Install R statmod
+RUN R -e "install.packages(c('statmod'),dependencies=TRUE, repos = 'http://cran.rstudio.com/')"
+
+# Install Shimmer
+RUN cd /shimmer && perl /shimmer/Build.PL --install_base /shimmer
+RUN /shimmer/Build
+RUN /shimmer/Build install
+
+ENV PATH="${PATH}:/shimmer/bin"
+ENV PERL5LIB="/shimmer/bin/lib/perl5:${PERL5LIB}"