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  <title>Noor Sohail – Publications</title>
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      <h1><b>Noor Sohail</b></h1>
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        <span class="outlined">Bioinformatician</span><br>
        <span class="plain">Harvard Chan Bioinformatics Core</span><br>
        <span class="plain">Harvard T.H. Chan School of Public Health</span>
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        <h2>Projects &amp; Teaching Materials</h2>
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           WORKSHOPS
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        <h3>Workshops</h3>
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              <td class="proj-img">
                <img src="images/projects/scrna.png" alt="scRNA-seq workshop preview" />
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              <td class="proj-text">
                <a class="proj-title" href="https://hbctraining.github.io/Intro-to-scRNAseq/" target="_blank">Introduction to single-cell RNA-seq</a>
                <p>Hands-on workshop covering experimental design, QC, clustering, and cell type annotation using Seurat in R/RStudio, starting from count matrices.</p>
              </td>
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              <td class="proj-img">
                <img src="images/projects/spatial.png" alt="Spatial transcriptomics workshop preview" />
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                <a class="proj-title" href="https://hbctraining.github.io/Intro-to-spatial-transcriptomics/" target="_blank">Introduction to Spatial Transcriptomics</a>
                <p>Hands-on introduction to spatial transcriptomics data analysis of Visium HD experiments.</p>
              </td>
            </tr>
            <tr>
              <td class="proj-img">
                <img src="images/projects/pseudobulk.png" alt="Pseudobulk workshop preview" />
              </td>
              <td class="proj-text">
                <a class="proj-title" href="https://hbctraining.github.io/Pseudobulk-for-scRNAseq/" target="_blank">Pseudobulk and Related Approaches for scRNA-seq Analysis</a>
                <p>Workshop on pseudobulk methods (from single-cell RNA-seq data) for experimental designs
                  with biological replicates. Therefore sample variation can be accounted for with DESeq2 and proportional analyses.</p>
              </td>
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                <img src="images/projects/python.png" alt="Intro to Python workshop preview" />
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              <td class="proj-text">
                <a class="proj-title" href="https://hbctraining.github.io/Intro-to-Python/" target="_blank">Introduction to Python</a>
                <p>Practical workshop from zero Python experience to working with real-world data. Includes topics such
                  as: data structures, data manipulation with pandas, and visualization with Matplotlib and Seaborn.</p>
              </td>
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          </tbody>
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      </div><!-- /.projects-section workshops -->

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      <div class="projects-section">
        <h3>Workflows</h3>
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              <td class="proj-img">
                <img src="images/projects/coexp.png" alt="Co-expression workflow preview" />
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                <a class="proj-title" href="https://github.com/hbc/scrna_coexpression_workflow/" target="_blank">Co-expression Workflow for scRNA</a>
                <p>Calculate co-expression scores for zero-inflated single-cell datasets.</p>
              </td>
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              <td class="proj-img">
                <img src="images/projects/scrna_qc.png" alt="scRNA QC template preview" />
              </td>
              <td class="proj-text">
                <a class="proj-title" href="https://github.com/nsohail19/scRNA_qc/" target="_blank">Template for QC of scRNA</a>
                <p>Jupyter notebook template to run initial QC on scRNA datasets using scanpy.</p>
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      </div><!-- /.projects-section workflows -->

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        <h3>Data Visualization</h3>
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              <td class="proj-img">
                <img src="images/projects/tt.png" alt="Tidy Tuesday preview" />
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              <td class="proj-text">
                <a class="proj-title" href="https://github.com/nsohail19/tidy_tuesday" target="_blank">Tidy Tuesday</a>
                <p>Weekly data visualization practice using R and ggplot2.</p>
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