From 9bcc6a6da0358bcb3c96e5314ae460af6a999e7a Mon Sep 17 00:00:00 2001
From: Yannick Marcon <yannick.marcon@obiba.org>
Date: Sun, 8 Feb 2026 19:10:25 +0100
Subject: [PATCH 1/6] chore: migrate from Poetry to uv and bump version to
 5.4.0

- Migrate build system from Poetry to uv with Hatchling backend
- Convert pyproject.toml to PEP 621 standard format
- Update Python support from 3.7+ to 3.8+ (Python 3.7 EOL)
- Replace poetry.lock with uv.lock
- Update all Makefile commands to use uv (sync, run, build)
- Update GitHub Actions CI/CD workflows to use astral-sh/setup-uv@v4
- Change PyPI publishing to use uv publish with UV_PUBLISH_TOKEN
- Add .python-version file for automatic Python version management
- Update README with uv development setup instructions
- Fix bug in init_otp() null pointer exception when WWW-Authenticate header is missing
- Bump package version from 5.3.0 to 5.4.0

All 35 tests passing.
---
 .github/workflows/ci.yml     |  10 +-
 .github/workflows/deploy.yml |  16 +-
 .gitignore                   |   3 +-
 .python-version              |   1 +
 Makefile                     |   6 +-
 README.md                    |  39 ++-
 obiba_opal/core.py           | 264 +++++++++++--------
 poetry.lock                  | 484 -----------------------------------
 pyproject.toml               |  64 +++--
 uv.lock                      | 465 +++++++++++++++++++++++++++++++++
 10 files changed, 722 insertions(+), 630 deletions(-)
 create mode 100644 .python-version
 delete mode 100644 poetry.lock
 create mode 100644 uv.lock

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 981ad6d..29477e0 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -20,11 +20,13 @@ jobs:
         with:
           python-version: ${{ matrix.python-version }}
 
-      - name: Install Poetry
-        run: pip install poetry
+      - name: Install uv
+        uses: astral-sh/setup-uv@v4
+        with:
+          enable-cache: true
 
       - name: Install dependencies
-        run: poetry install -v
+        run: uv sync --all-extras
 
       - name: Run tests
-        run: poetry run pytest
+        run: uv run pytest
diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml
index cf21cdd..dd567a9 100644
--- a/.github/workflows/deploy.yml
+++ b/.github/workflows/deploy.yml
@@ -19,17 +19,19 @@ jobs:
         with:
           python-version: ${{ matrix.python-version }}
 
-      - name: Install Poetry
-        run: pip install poetry
+      - name: Install uv
+        uses: astral-sh/setup-uv@v4
 
       - name: Install dependencies
-        run: poetry install -v
+        run: uv sync --all-extras
 
       - name: Run tests
-        run: poetry run pytest
+        run: uv run pytest
 
-      - name: Configure PyPI credentials
-        run: poetry config http-basic.pypi ${{ secrets.PYPI_USER }} ${{ secrets.PYPI_PASSWORD }}
+      - name: Build package
+        run: uv build
 
       - name: Publish to PyPI
-        run: poetry publish --build --no-interaction
+        run: uv publish
+        env:
+          UV_PUBLISH_TOKEN: ${{ secrets.PYPI_TOKEN }}
diff --git a/.gitignore b/.gitignore
index 514a694..9db4e56 100644
--- a/.gitignore
+++ b/.gitignore
@@ -31,4 +31,5 @@ coverage
 .history
 __pycache__
 
-debug.py
\ No newline at end of file
+debug.py
+.serena/
\ No newline at end of file
diff --git a/.python-version b/.python-version
new file mode 100644
index 0000000..cc1923a
--- /dev/null
+++ b/.python-version
@@ -0,0 +1 @@
+3.8
diff --git a/Makefile b/Makefile
index d0da71b..e7e59d0 100644
--- a/Makefile
+++ b/Makefile
@@ -1,11 +1,11 @@
 install:
-	poetry install
+	uv sync --all-extras
 
 test:
-	poetry run pytest
+	uv run --all-extras pytest
 
 build:
-	poetry build
+	uv build
 
 clean:
 	rm -rf dist
diff --git a/README.md b/README.md
index f474c0b..d1b4dd6 100644
--- a/README.md
+++ b/README.md
@@ -17,17 +17,44 @@ Install with:
 pip install obiba-opal
 ```
 
-Note: `obiba-opal` depends on `pycurl` which itself depends on system libraries (mostly OpenSSL related). In case `pycurl` installation
-fails with **pip**, a quick fix is to install it via a system package:
+## Development
 
+This project uses [uv](https://docs.astral.sh/uv/) for dependency management and packaging.
+
+### Setup Development Environment
+
+1. Install uv:
+```shell
+# On macOS and Linux
+curl -LsSf https://astral.sh/uv/install.sh | sh
+
+# On Windows
+powershell -c "irm https://astral.sh/uv/install.ps1 | iex"
+
+# Or with pip
+pip install uv
+```
+
+2. Install dependencies:
 ```shell
-# on Debian systems
-sudo apt-get install python3-pycurl
+uv sync
+```
 
-# on RPM systems
-sudo yum install python3-pycurl
+3. Run tests:
+```shell
+uv run pytest
 ```
 
+4. Build the package:
+```shell
+uv build
+```
+
+### Requirements
+
+- Python 3.8 or higher
+- uv (for development)
+
 ### CLI
 
 To get the options of the command line:
diff --git a/obiba_opal/core.py b/obiba_opal/core.py
index 877bc88..6c402d0 100755
--- a/obiba_opal/core.py
+++ b/obiba_opal/core.py
@@ -15,6 +15,7 @@
 from http import HTTPStatus
 from http.client import HTTPConnection
 
+
 class OpalClient:
     """
     OpalClient holds the configuration for connecting to Opal.
@@ -23,7 +24,7 @@ class OpalClient:
     def __init__(self, server=None):
         self.session = Session()
         self.headers = {}
-        self.base_url = self.__ensure_entry('Opal address', server)
+        self.base_url = self.__ensure_entry("Opal address", server)
         self.id = None
         self.rid = None
 
@@ -38,13 +39,25 @@ def build(cls, loginInfo):
         :param loginInfo - login related information
         """
         if loginInfo.isSsl():
-            return OpalClient.buildWithCertificate(loginInfo.data['server'], loginInfo.data['cert'],
-                                                   loginInfo.data['key'], loginInfo.data['no_ssl_verify'])
+            return OpalClient.buildWithCertificate(
+                loginInfo.data["server"],
+                loginInfo.data["cert"],
+                loginInfo.data["key"],
+                loginInfo.data["no_ssl_verify"],
+            )
         elif loginInfo.isToken():
-            return OpalClient.buildWithToken(loginInfo.data['server'], loginInfo.data['token'], loginInfo.data['no_ssl_verify'])
+            return OpalClient.buildWithToken(
+                loginInfo.data["server"],
+                loginInfo.data["token"],
+                loginInfo.data["no_ssl_verify"],
+            )
         else:
-            return OpalClient.buildWithAuthentication(loginInfo.data['server'], loginInfo.data['user'],
-                                                      loginInfo.data['password'], loginInfo.data['no_ssl_verify'])
+            return OpalClient.buildWithAuthentication(
+                loginInfo.data["server"],
+                loginInfo.data["user"],
+                loginInfo.data["password"],
+                loginInfo.data["no_ssl_verify"],
+            )
 
     @classmethod
     def buildWithCertificate(cls, server, cert, key, no_ssl_verify: bool = False):
@@ -58,14 +71,16 @@ def buildWithCertificate(cls, server, cert, key, no_ssl_verify: bool = False):
         """
 
         client = cls(server)
-        if client.base_url.startswith('https:'):
+        if client.base_url.startswith("https:"):
             client.session.verify = False if no_ssl_verify else True
         client.session.cert = (cert, key)
 
         return client
 
     @classmethod
-    def buildWithAuthentication(cls, server, user, password, no_ssl_verify: bool = False):
+    def buildWithAuthentication(
+        cls, server, user, password, no_ssl_verify: bool = False
+    ):
         """
         Creates a client instance authenticated by a user/password
 
@@ -75,7 +90,7 @@ def buildWithAuthentication(cls, server, user, password, no_ssl_verify: bool = F
         :param no_ssl_verify - if True, the SSL certificate is not verified (not recommended)
         """
         client = cls(server)
-        if client.base_url.startswith('https:'):
+        if client.base_url.startswith("https:"):
             client.session.verify = not no_ssl_verify
             if no_ssl_verify:
                 urllib3.disable_warnings()
@@ -102,7 +117,7 @@ def buildWithToken(cls, server, token, no_ssl_verify: bool = False):
         :param no_ssl_verify - if True, the SSL certificate is not verified (not recommended)
         """
         client = cls(server)
-        if client.base_url.startswith('https:'):
+        if client.base_url.startswith("https:"):
             client.session.verify = False if no_ssl_verify else True
         client.token(token)
         return client
@@ -111,9 +126,9 @@ def __ensure_entry(self, text, entry, pwd=False):
         e = entry
         if not entry:
             if pwd:
-                e = getpass.getpass(prompt=text + ': ')
+                e = getpass.getpass(prompt=text + ": ")
             else:
-                e = input(text + ': ')
+                e = input(text + ": ")
         return e
 
     def credentials(self, user, password):
@@ -123,9 +138,13 @@ def credentials(self, user, password):
         :param user - username
         :param password - user password
         """
-        u = self.__ensure_entry('User name', user)
-        p = self.__ensure_entry('Password', password, True)
-        return self.header('Authorization', 'Basic ' + base64.b64encode('{}:{}'.format(u, p).encode('utf-8')).decode('utf-8'))
+        u = self.__ensure_entry("User name", user)
+        p = self.__ensure_entry("Password", password, True)
+        return self.header(
+            "Authorization",
+            "Basic "
+            + base64.b64encode("{}:{}".format(u, p).encode("utf-8")).decode("utf-8"),
+        )
 
     def token(self, token):
         """
@@ -133,23 +152,27 @@ def token(self, token):
 
         :param token - token key
         """
-        tk = self.__ensure_entry('Token', token, True)
-        return self.header('X-Opal-Auth', tk)
+        tk = self.__ensure_entry("Token", token, True)
+        return self.header("X-Opal-Auth", tk)
 
     def init_otp(self):
         """
         Checks if an OTP is needed and if yes, prompts the user for the security code
         """
         request = self.new_request()
-        profile_url = '/system/subject-profile/_current'
+        profile_url = "/system/subject-profile/_current"
         response = request.accept_json().get().resource(profile_url).send()
         if response.code == 401:
-            otp_header = response.get_header('WWW-Authenticate').split(' ')[0]
-            if otp_header == 'X-Opal-TOTP' or otp_header == 'X-Obiba-TOTP':
-                val = input('Enter 6-digits code: ')
-                # validate code and get the opalsid cookie for further requests
-                request = self.new_request()
-                request.header(otp_header, val).accept_json().get().resource(profile_url).send()
+            auth_header = response.get_header("WWW-Authenticate")
+            if auth_header:
+                otp_header = auth_header.split(" ")[0]
+                if otp_header == "X-Opal-TOTP" or otp_header == "X-Obiba-TOTP":
+                    val = input("Enter 6-digits code: ")
+                    # validate code and get the opalsid cookie for further requests
+                    request = self.new_request()
+                    request.header(otp_header, val).accept_json().get().resource(
+                        profile_url
+                    ).send()
 
     def verify(self, value):
         """
@@ -180,7 +203,7 @@ def close(self):
         if self.id is not None:
             # request to close session
             try:
-                self.new_request().resource('/auth/session/_current').delete().send()
+                self.new_request().resource("/auth/session/_current").delete().send()
                 self.session.close()
             except Exception as e:
                 pass
@@ -190,6 +213,7 @@ class LoginInfo:
         """
         Class used to parse and hold the login info
         """
+
         data = None
 
         @classmethod
@@ -197,35 +221,36 @@ def parse(cls, args):
             data = {}
             argv = vars(args)
 
-            if argv.get('opal'):
-                data['server'] = argv['opal']
+            if argv.get("opal"):
+                data["server"] = argv["opal"]
             else:
-                raise ValueError('Opal server information is missing.')
-
-            data['no_ssl_verify'] = argv.get('no_ssl_verify')
-
-            if argv.get('user') and argv.get('password'):
-                data['user'] = argv['user']
-                data['password'] = argv['password']
-            elif argv.get('token'):
-                data['token'] = argv['token']
-            elif argv.get('ssl_cert') and argv.get('ssl_key'):
-                data['cert'] = argv['ssl_cert']
-                data['key'] = argv['ssl_key']
+                raise ValueError("Opal server information is missing.")
+
+            data["no_ssl_verify"] = argv.get("no_ssl_verify")
+
+            if argv.get("user") and argv.get("password"):
+                data["user"] = argv["user"]
+                data["password"] = argv["password"]
+            elif argv.get("token"):
+                data["token"] = argv["token"]
+            elif argv.get("ssl_cert") and argv.get("ssl_key"):
+                data["cert"] = argv["ssl_cert"]
+                data["key"] = argv["ssl_key"]
             else:
                 raise ValueError(
-                    'Invalid login information. Requires user-password or token or certificate-key information')
+                    "Invalid login information. Requires user-password or token or certificate-key information"
+                )
 
-            setattr(cls, 'data', data)
+            setattr(cls, "data", data)
             return cls()
 
         def isToken(self):
-            if self.data.keys() & {'token'}:
+            if self.data.keys() & {"token"}:
                 return True
             return False
 
         def isSsl(self):
-            if self.data.keys() & {'cert', 'key'}:
+            if self.data.keys() & {"cert", "key"}:
                 return True
             return False
 
@@ -238,7 +263,7 @@ class OpalRequest:
     def __init__(self, opal_client):
         self.client = opal_client
         self.options = {}
-        self.headers = {'Accept': 'application/json'}
+        self.headers = {"Accept": "application/json"}
         self._verbose = False
         self.params = {}
         self._fail_on_error = False
@@ -252,7 +277,7 @@ def timeout(self, value):
 
         :param value - connection/read timout
         """
-        self.options['timeout'] = value
+        self.options["timeout"] = value
         return self
 
     def verbose(self):
@@ -281,57 +306,57 @@ def header(self, key, value):
         return self
 
     def accept(self, value):
-        self.headers.update({'Accept': value})
+        self.headers.update({"Accept": value})
         return self
 
     def accept_json(self):
-        return self.accept('application/json')
+        return self.accept("application/json")
 
     def accept_xml(self):
-        return self.accept('application/xml')
+        return self.accept("application/xml")
 
     def accept_text_csv(self):
-        return self.accept('text/csv')
+        return self.accept("text/csv")
 
     def content_type(self, value):
-        self.headers.update({'Content-Type': value})
+        self.headers.update({"Content-Type": value})
         return self
 
     def content_type_json(self):
-        return self.content_type('application/json')
+        return self.content_type("application/json")
 
     def content_type_text_plain(self):
-        return self.content_type('text/plain')
+        return self.content_type("text/plain")
 
     def content_type_form_urlencoded(self):
-        return self.content_type('application/x-www-form-urlencoded')
+        return self.content_type("application/x-www-form-urlencoded")
 
     def content_type_rscript(self):
-        return self.content_type('application/x-rscript')
+        return self.content_type("application/x-rscript")
 
     def method(self, method):
         if not method:
-            self.method = 'GET'
-        elif method in ['GET', 'DELETE', 'PUT', 'POST', 'OPTIONS']:
+            self.method = "GET"
+        elif method in ["GET", "DELETE", "PUT", "POST", "OPTIONS"]:
             self.method = method
         else:
-            raise ValueError('Not a valid method: ' + method)
+            raise ValueError("Not a valid method: " + method)
         return self
 
     def get(self):
-        return self.method('GET')
+        return self.method("GET")
 
     def put(self):
-        return self.method('PUT')
+        return self.method("PUT")
 
     def post(self):
-        return self.method('POST')
+        return self.method("POST")
 
     def delete(self):
-        return self.method('DELETE')
+        return self.method("DELETE")
 
     def options(self):
-        return self.method('OPTIONS')
+        return self.method("OPTIONS")
 
     def resource(self, ws):
         self.resource = ws
@@ -344,10 +369,10 @@ def content(self, content):
         :param content - request body
         """
         if self._verbose:
-            print('* Content:')
+            print("* Content:")
             print(content)
 
-        self.data = content.encode('utf-8')
+        self.data = content.encode("utf-8")
         return self
 
     def content_upload(self, filename):
@@ -357,14 +382,16 @@ def content_upload(self, filename):
         Note: Requests library takes care of mutlti-part setting in the header
         """
         if self._verbose:
-            print('* File Content:')
-            print('[file=' + filename + ', size=' + str(os.path.getsize(filename)) + ']')
-        self.files = {'file': (os.path.basename(filename), open(filename, 'rb'))}
+            print("* File Content:")
+            print(
+                "[file=" + filename + ", size=" + str(os.path.getsize(filename)) + "]"
+            )
+        self.files = {"file": (os.path.basename(filename), open(filename, "rb"))}
         return self
 
     def __build_request(self):
         request = Request()
-        request.method = self.method if self.method else 'GET'
+        request.method = self.method if self.method else "GET"
 
         for option in self.options:
             setattr(request, option, self.options[option])
@@ -376,12 +403,12 @@ def __build_request(self):
 
         if self.resource:
             path = self.resource
-            request.url = self.client.base_url + '/ws' + path
+            request.url = self.client.base_url + "/ws" + path
 
             if self.params:
                 request.params = self.params
         else:
-            raise ValueError('Resource is missing')
+            raise ValueError("Resource is missing")
 
         if self.files is not None:
             request.files = self.files
@@ -391,7 +418,7 @@ def __build_request(self):
 
         return request
 
-    def send(self, fp = None):
+    def send(self, fp=None):
         """
         Sends the request via client session object
         """
@@ -406,6 +433,7 @@ def send(self, fp = None):
 
         return response
 
+
 class OpalResponse:
     """
     Response from Opal: code, headers and content
@@ -451,32 +479,34 @@ def get_header(self, header: str) -> str:
         return value
 
     def get_location(self):
-        return self.get_header('Location')
+        return self.get_header("Location")
 
     def extract_cookie_value(self, name: str):
-        if 'set-cookie' in self.response.headers:
-            if type(self.response.headers['set-cookie']) == str:
-                return self._extract_cookie_single_value(name, self.response.headers['set-cookie'])
+        if "set-cookie" in self.response.headers:
+            if type(self.response.headers["set-cookie"]) == str:
+                return self._extract_cookie_single_value(
+                    name, self.response.headers["set-cookie"]
+                )
             else:
-                for header in self.response.headers['set-cookie']:
+                for header in self.response.headers["set-cookie"]:
                     rval = self._extract_cookie_single_value(name, header)
                     if rval is not None:
                         return rval
         return None
 
     def _extract_cookie_single_value(self, name: str, header: str):
-        cookie_parts = header.split(';')
+        cookie_parts = header.split(";")
         if len(cookie_parts) > 0:
-            cookie_parts = cookie_parts[0].split('=')
+            cookie_parts = cookie_parts[0].split("=")
             if len(cookie_parts) == 2 and cookie_parts[0] == name:
                 return cookie_parts[1]
         return None
 
     def __str__(self):
-        return self.response.content.decode('utf-8')
+        return self.response.content.decode("utf-8")
 
-class Formatter:
 
+class Formatter:
     @classmethod
     def to_json(self, data: any, pretty: bool = False):
         if pretty:
@@ -489,6 +519,7 @@ def print_json(self, data: any, pretty: bool = False):
         if data is not None:
             print(self.to_json(data, pretty))
 
+
 class MagmaNameResolver:
     """
     Decode Magma fully qualified names.
@@ -496,15 +527,15 @@ class MagmaNameResolver:
 
     def __init__(self, name):
         self.name = name
-        self.datasource, sep, remain = name.partition('.')
-        self.table, sep, self.variable = remain.partition(':')
+        self.datasource, sep, remain = name.partition(".")
+        self.table, sep, self.variable = remain.partition(":")
         if len(self.table) == 0:
             self.table = None
         if len(self.variable) == 0:
             self.variable = None
 
     def is_datasources(self):
-        return self.datasource == None or self.datasource == '*'
+        return self.datasource == None or self.datasource == "*"
 
     def is_datasource(self):
         if self.table:
@@ -513,7 +544,7 @@ def is_datasource(self):
             return True
 
     def is_tables(self):
-        return self.table == '*'
+        return self.table == "*"
 
     def is_table(self):
         if self.table and not self.variable:
@@ -522,7 +553,7 @@ def is_table(self):
             return False
 
     def is_variables(self):
-        return self.variable == '*'
+        return self.variable == "*"
 
     def is_variable(self):
         if self.variable:
@@ -533,25 +564,36 @@ def is_variable(self):
     def get_ws(self):
         if self.is_datasources():
             if self.is_tables():
-                return UriBuilder(['datasource', 'tables']).build()
+                return UriBuilder(["datasource", "tables"]).build()
             else:
-                return UriBuilder(['datasources']).build()
+                return UriBuilder(["datasources"]).build()
         elif self.is_datasource():
-            return UriBuilder(['datasource', self.datasource]).build()
+            return UriBuilder(["datasource", self.datasource]).build()
         elif self.is_tables():
-            return UriBuilder(['datasource', self.datasource, 'tables']).build()
+            return UriBuilder(["datasource", self.datasource, "tables"]).build()
         elif self.is_table():
             return self.get_table_ws()
         elif self.is_variables():
-            return UriBuilder(['datasource', self.datasource, 'table', self.table, 'variables']).build()
+            return UriBuilder(
+                ["datasource", self.datasource, "table", self.table, "variables"]
+            ).build()
         else:
             return self.get_variable_ws()
 
     def get_table_ws(self):
-        return UriBuilder(['datasource', self.datasource, 'table', self.table]).build()
+        return UriBuilder(["datasource", self.datasource, "table", self.table]).build()
 
     def get_variable_ws(self):
-        return UriBuilder(['datasource', self.datasource, 'table', self.table, 'variable', self.variable]).build()
+        return UriBuilder(
+            [
+                "datasource",
+                self.datasource,
+                "table",
+                self.table,
+                "variable",
+                self.variable,
+            ]
+        ).build()
 
 
 class UriBuilder:
@@ -576,43 +618,59 @@ def params(self, params):
         return self
 
     def query(self, key, value):
-        val = '%s' % value
+        val = "%s" % value
         if type(value) == bool:
             val = val.lower()
-        self.params.update([(key, val), ])
+        self.params.update(
+            [
+                (key, val),
+            ]
+        )
         return self
 
     def __str__(self):
         def concat_segment(p, s):
-            return '%s/%s' % (p, s)
+            return "%s/%s" % (p, s)
 
         def concat_params(k):
-            return '%s=%s' % (urllib.parse.quote(k), urllib.parse.quote(str(self.params[k])))
+            return "%s=%s" % (
+                urllib.parse.quote(k),
+                urllib.parse.quote(str(self.params[k])),
+            )
 
         def concat_query(q, p):
-            return '%s&%s' % (q, p)
+            return "%s&%s" % (q, p)
 
-        p = urllib.parse.quote('/' + reduce(concat_segment, self.path))
+        p = urllib.parse.quote("/" + reduce(concat_segment, self.path))
         if len(self.params):
             q = reduce(concat_query, list(map(concat_params, list(self.params.keys()))))
-            return '%s?%s' % (p, q)
+            return "%s?%s" % (p, q)
         else:
             return p
 
     def build(self):
         return self.__str__()
 
+
 class HTTPError(Exception):
     def __init__(self, response: OpalResponse, message: str = None):
         # Call the base class constructor with the parameters it needs
-        super().__init__(message if message else 'HTTP Error: %s' % response.code)
+        super().__init__(message if message else "HTTP Error: %s" % response.code)
         self.code = response.code
         http_status = [x for x in list(HTTPStatus) if x.value == response.code][0]
-        self.message = message if message else '%s: %s' % (http_status.phrase, http_status.description)
-        self.error = response.from_json() if response.content else {'code': response.code, 'status': self.message}
+        self.message = (
+            message
+            if message
+            else "%s: %s" % (http_status.phrase, http_status.description)
+        )
+        self.error = (
+            response.from_json()
+            if response.content
+            else {"code": response.code, "status": self.message}
+        )
         # case the reported error is not a dict
         if type(self.error) != dict:
-            self.error = {'code': response.code, 'status': self.error}
+            self.error = {"code": response.code, "status": self.error}
 
     def is_client_error(self) -> bool:
         return self.code >= 400 and self.code < 500
diff --git a/poetry.lock b/poetry.lock
deleted file mode 100644
index 2991123..0000000
--- a/poetry.lock
+++ /dev/null
@@ -1,484 +0,0 @@
-# This file is automatically @generated by Poetry 2.1.2 and should not be changed by hand.
-
-[[package]]
-name = "certifi"
-version = "2025.6.15"
-description = "Python package for providing Mozilla's CA Bundle."
-optional = false
-python-versions = ">=3.7"
-groups = ["main"]
-files = [
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-    {file = "certifi-2025.6.15.tar.gz", hash = "sha256:d747aa5a8b9bbbb1bb8c22bb13e22bd1f18e9796defa16bab421f7f7a317323b"},
-]
-
-[[package]]
-name = "charset-normalizer"
-version = "3.4.2"
-description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
-optional = false
-python-versions = ">=3.7"
-groups = ["main"]
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-optional = false
-python-versions = ">=3.7"
-groups = ["test"]
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-version = "1.26.17"
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-optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
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-secure = ["certifi", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "ipaddress ; python_version == \"2.7\"", "pyOpenSSL (>=0.14)", "urllib3-secure-extra"]
-socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]
-
-[[package]]
-name = "urllib3"
-version = "2.2.3"
-description = "HTTP library with thread-safe connection pooling, file post, and more."
-optional = false
-python-versions = ">=3.8"
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-h2 = ["h2 (>=4,<5)"]
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-zstd = ["zstandard (>=0.18.0)"]
-
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-description = "Backport of pathlib-compatible object wrapper for zip files"
-optional = false
-python-versions = ">=3.7"
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-docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
-testing = ["big-O", "flake8 (<5)", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7) ; platform_python_implementation != \"PyPy\"", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8 ; python_version < \"3.12\"", "pytest-mypy (>=0.9.1) ; platform_python_implementation != \"PyPy\""]
-
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-lock-version = "2.1"
-python-versions = "^3.7"
-content-hash = "f31dc95e2644ff3bfc251d0099a5bbfaa20815b25d5ba2de924b8da3586eb92d"
diff --git a/pyproject.toml b/pyproject.toml
index 5385139..849b673 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,30 +1,50 @@
-[tool.poetry]
+[project]
 name = "obiba-opal"
-version = "5.3.0"
+version = "5.4.0"
 description = "OBiBa/Opal python client."
-authors = ["Yannick Marcon <yannick.marcon@obiba.org>"]
-maintainers = ["Yannick Marcon <yannick.marcon@obiba.org>"]
-license = "GPL-v3"
+authors = [
+    {name = "Yannick Marcon", email = "yannick.marcon@obiba.org"}
+]
+maintainers = [
+    {name = "Yannick Marcon", email = "yannick.marcon@obiba.org"}
+]
+license = {text = "GPL-3.0-only"}
 readme = "README.md"
-packages = [{include = "obiba_opal"}]
-homepage = "https://www.obiba.org"
-repository = "https://github.com/obiba/opal-python-client"
-documentation = "https://opaldoc.obiba.org/en/latest/python-user-guide/"
+requires-python = ">=3.8"
+keywords = ["opal", "obiba", "data", "management"]
+classifiers = [
+    "Development Status :: 5 - Production/Stable",
+    "Intended Audience :: Developers",
+    "License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
+    "Programming Language :: Python :: 3",
+    "Programming Language :: Python :: 3.8",
+    "Programming Language :: Python :: 3.9",
+    "Programming Language :: Python :: 3.10",
+    "Programming Language :: Python :: 3.11",
+    "Programming Language :: Python :: 3.12",
+]
+dependencies = [
+    "requests>=2.31.0",
+    "urllib3>=2.0",
+]
 
-[tool.poetry.urls]
-"Bug Tracker" = "https://github.com/obiba/opal-python-client/issues"
-
-[tool.poetry.dependencies]
-python = "^3.7"
-requests = "^2.31.0"
-urllib3 =  [{version = "1.26.17", python = "<3.8"}, {version = "^2.0", python = "^3.8"}]
+[project.optional-dependencies]
+test = [
+    "pytest>=7.2.2",
+]
 
-[tool.poetry.group.test.dependencies]
-pytest = "^7.2.2"
+[project.scripts]
+opal = "obiba_opal.console:run"
 
-[tool.poetry.scripts]
-opal = 'obiba_opal.console:run'
+[project.urls]
+Homepage = "https://www.obiba.org"
+Repository = "https://github.com/obiba/opal-python-client"
+Documentation = "https://opaldoc.obiba.org/en/latest/python-user-guide/"
+"Bug Tracker" = "https://github.com/obiba/opal-python-client/issues"
 
 [build-system]
-requires = ["poetry-core"]
-build-backend = "poetry.core.masonry.api"
+requires = ["hatchling"]
+build-backend = "hatchling.build"
+
+[tool.hatch.build.targets.wheel]
+packages = ["obiba_opal"]
diff --git a/uv.lock b/uv.lock
new file mode 100644
index 0000000..446e291
--- /dev/null
+++ b/uv.lock
@@ -0,0 +1,465 @@
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From dad0b7a544c467ec80f9ff4eeb53123a81513a6b Mon Sep 17 00:00:00 2001
From: Yannick Marcon <yannick.marcon@obiba.org>
Date: Sun, 8 Feb 2026 19:21:51 +0100
Subject: [PATCH 2/6] chore: update minimum Python version from 3.8 to 3.10

- Update requires-python to >=3.10 in pyproject.toml
- Remove Python 3.8 and 3.9 from classifiers, add Python 3.13
- Update .python-version to 3.10
- Update CI workflow to test Python 3.10, 3.11, 3.12, 3.13
- Update deploy workflow to use Python 3.12
- Update README requirements to Python 3.10 or higher
- Update uv.lock with new dependency versions for Python 3.10+

All 35 tests passing on Python 3.10.
---
 .github/workflows/ci.yml     |   2 +-
 .github/workflows/deploy.yml |   2 +-
 .python-version              |   2 +-
 README.md                    |   2 +-
 pyproject.toml               |   5 +-
 uv.lock                      | 203 +++--------------------------------
 6 files changed, 22 insertions(+), 194 deletions(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 29477e0..dd54939 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -11,7 +11,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: [3.8.18, 3.10.18, 3.12.11]
+        python-version: ["3.10", "3.11", "3.12", "3.13"]
     steps:
       - uses: actions/checkout@v4
 
diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml
index dd567a9..2c7f77c 100644
--- a/.github/workflows/deploy.yml
+++ b/.github/workflows/deploy.yml
@@ -10,7 +10,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: [3.12.11]
+        python-version: ["3.12"]
     steps:
       - uses: actions/checkout@v4
 
diff --git a/.python-version b/.python-version
index cc1923a..c8cfe39 100644
--- a/.python-version
+++ b/.python-version
@@ -1 +1 @@
-3.8
+3.10
diff --git a/README.md b/README.md
index d1b4dd6..1dbcf18 100644
--- a/README.md
+++ b/README.md
@@ -52,7 +52,7 @@ uv build
 
 ### Requirements
 
-- Python 3.8 or higher
+- Python 3.10 or higher
 - uv (for development)
 
 ### CLI
diff --git a/pyproject.toml b/pyproject.toml
index 849b673..6a9dcda 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -10,18 +10,17 @@ maintainers = [
 ]
 license = {text = "GPL-3.0-only"}
 readme = "README.md"
-requires-python = ">=3.8"
+requires-python = ">=3.10"
 keywords = ["opal", "obiba", "data", "management"]
 classifiers = [
     "Development Status :: 5 - Production/Stable",
     "Intended Audience :: Developers",
     "License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
     "Programming Language :: Python :: 3",
-    "Programming Language :: Python :: 3.8",
-    "Programming Language :: Python :: 3.9",
     "Programming Language :: Python :: 3.10",
     "Programming Language :: Python :: 3.11",
     "Programming Language :: Python :: 3.12",
+    "Programming Language :: Python :: 3.13",
 ]
 dependencies = [
     "requests>=2.31.0",
diff --git a/uv.lock b/uv.lock
index 446e291..dfcd305 100644
--- a/uv.lock
+++ b/uv.lock
@@ -1,11 +1,6 @@
 version = 1
 revision = 3
-requires-python = ">=3.8"
-resolution-markers = [
-    "python_full_version >= '3.10'",
-    "python_full_version == '3.9.*'",
-    "python_full_version < '3.9'",
-]
+requires-python = ">=3.10"
 
 [[package]]
 name = "certifi"
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@@ -150,8 +114,7 @@ name = "exceptiongroup"
 version = "1.3.1"
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From 5817a02097a993b6001241edbf98e0cb790bb3c9 Mon Sep 17 00:00:00 2001
From: Yannick Marcon <yannick.marcon@obiba.org>
Date: Sun, 8 Feb 2026 19:24:44 +0100
Subject: [PATCH 3/6] chore: bump version to 6.0.0 for breaking changes

BREAKING CHANGE: Dropped support for Python 3.8 and 3.9

This is a major version bump due to the following breaking changes:
- Minimum Python version is now 3.10 (was 3.8)
- Python 3.8 and 3.9 are no longer supported
- Users must upgrade to Python 3.10 or higher

Following semantic versioning principles for this breaking change.
---
 pyproject.toml | 2 +-
 uv.lock        | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index 6a9dcda..ab69894 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [project]
 name = "obiba-opal"
-version = "5.4.0"
+version = "6.0.0"
 description = "OBiBa/Opal python client."
 authors = [
     {name = "Yannick Marcon", email = "yannick.marcon@obiba.org"}
diff --git a/uv.lock b/uv.lock
index dfcd305..60f8436 100644
--- a/uv.lock
+++ b/uv.lock
@@ -141,7 +141,7 @@ wheels = [
 
 [[package]]
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-version = "5.4.0"
+version = "6.0.0"
 source = { editable = "." }
 dependencies = [
     { name = "requests" },

From 61725d303804043c4c87a8dbaf6d206daafc6916 Mon Sep 17 00:00:00 2001
From: Yannick Marcon <yannick.marcon@obiba.org>
Date: Sun, 8 Feb 2026 19:35:12 +0100
Subject: [PATCH 4/6] fix: support concurrent tests on files

---
 tests/test_file.py | 28 +++++++++++++++++++++-------
 1 file changed, 21 insertions(+), 7 deletions(-)

diff --git a/tests/test_file.py b/tests/test_file.py
index c7f663d..2ecc5ba 100644
--- a/tests/test_file.py
+++ b/tests/test_file.py
@@ -3,24 +3,38 @@
 from obiba_opal.file import FileService
 from obiba_opal.core import HTTPError
 import os
+import shutil
+from uuid import uuid4
 
 class TestClass(unittest.TestCase):
 
   TEST_FILE = '/tmp/data.csv'
   TEST_ZIPPED_FILE = '/tmp/data.zip'
+  TEST_FILENAME = 'data.csv'
+  LOCAL_UPLOAD_FILE = '/tmp/data.csv'
 
   @classmethod
   def setup_class(cls):
     cls.service = FileService(make_client())
+    suffix = uuid4().hex
+    cls.TEST_FILENAME = f'data_{suffix}.csv'
+    cls.TEST_FILE = f'/tmp/{cls.TEST_FILENAME}'
+    cls.TEST_ZIPPED_FILE = f'/tmp/data_{suffix}.zip'
+    cls.LOCAL_UPLOAD_FILE = f'/tmp/{cls.TEST_FILENAME}'
 
   def test_1_fileUpload(self):
     try:
-      self.service.upload_file('./tests/resources/data.csv', '/tmp')
-      response = self.service.file_info(self.TEST_FILE)
-      if response['name'] == 'data.csv':
-        assert True
-      else:
-        assert False
+      shutil.copyfile('./tests/resources/data.csv', self.LOCAL_UPLOAD_FILE)
+      try:
+        self.service.upload_file(self.LOCAL_UPLOAD_FILE, '/tmp')
+        response = self.service.file_info(self.TEST_FILE)
+        if response['name'] == self.TEST_FILENAME:
+          assert True
+        else:
+          assert False
+      finally:
+        if os.path.exists(self.LOCAL_UPLOAD_FILE):
+          os.remove(self.LOCAL_UPLOAD_FILE)
     except Exception as e:
       assert False
 
@@ -53,7 +67,7 @@ def test_3_fileDownloadWithPassword(self):
 
   def test_4_deleteUpload(self):
     try:
-      self.service.delete_file('/tmp/data.csv')
+      self.service.delete_file(self.TEST_FILE)
       self.service.file_info(self.TEST_FILE)
     except HTTPError as e:
       assert e.code == 404

From d4dfc39fb0e07d2a47dad9c54b98e64c8cfab556 Mon Sep 17 00:00:00 2001
From: Yannick Marcon <yannick.marcon@obiba.org>
Date: Sun, 8 Feb 2026 21:37:11 +0100
Subject: [PATCH 5/6] chore: code cleanup

---
 README.md          | 10 +-----
 obiba_opal/core.py | 76 ++++++++++++++++++++++++++--------------------
 2 files changed, 44 insertions(+), 42 deletions(-)

diff --git a/README.md b/README.md
index 1dbcf18..0ac7112 100644
--- a/README.md
+++ b/README.md
@@ -24,16 +24,8 @@ This project uses [uv](https://docs.astral.sh/uv/) for dependency management and
 ### Setup Development Environment
 
 1. Install uv:
-```shell
-# On macOS and Linux
-curl -LsSf https://astral.sh/uv/install.sh | sh
-
-# On Windows
-powershell -c "irm https://astral.sh/uv/install.ps1 | iex"
 
-# Or with pip
-pip install uv
-```
+See [uv installation](https://docs.astral.sh/uv/getting-started/installation/).
 
 2. Install dependencies:
 ```shell
diff --git a/obiba_opal/core.py b/obiba_opal/core.py
index 6c402d0..6ac09ee 100755
--- a/obiba_opal/core.py
+++ b/obiba_opal/core.py
@@ -268,7 +268,10 @@ def __init__(self, opal_client):
         self.params = {}
         self._fail_on_error = False
         self.files = None
+        self._upload_file = None
         self.data = None
+        self._method = "GET"
+        self._resource = None
 
     def timeout(self, value):
         """
@@ -336,9 +339,9 @@ def content_type_rscript(self):
 
     def method(self, method):
         if not method:
-            self.method = "GET"
+            self._method = "GET"
         elif method in ["GET", "DELETE", "PUT", "POST", "OPTIONS"]:
-            self.method = method
+            self._method = method
         else:
             raise ValueError("Not a valid method: " + method)
         return self
@@ -359,7 +362,7 @@ def options(self):
         return self.method("OPTIONS")
 
     def resource(self, ws):
-        self.resource = ws
+        self._resource = ws
         return self
 
     def content(self, content):
@@ -386,12 +389,12 @@ def content_upload(self, filename):
             print(
                 "[file=" + filename + ", size=" + str(os.path.getsize(filename)) + "]"
             )
-        self.files = {"file": (os.path.basename(filename), open(filename, "rb"))}
+        self._upload_file = filename
         return self
 
     def __build_request(self):
         request = Request()
-        request.method = self.method if self.method else "GET"
+        request.method = self._method if self._method else "GET"
 
         for option in self.options:
             setattr(request, option, self.options[option])
@@ -401,8 +404,8 @@ def __build_request(self):
         request.headers.update(self.client.session.headers)
         request.headers.update(self.headers)
 
-        if self.resource:
-            path = self.resource
+        if self._resource:
+            path = self._resource
             request.url = self.client.base_url + "/ws" + path
 
             if self.params:
@@ -410,6 +413,10 @@ def __build_request(self):
         else:
             raise ValueError("Resource is missing")
 
+        if self._upload_file is not None:
+            # Open file here, will be closed in send() method
+            self.files = {"file": (os.path.basename(self._upload_file), open(self._upload_file, "rb"))}
+
         if self.files is not None:
             request.files = self.files
 
@@ -423,15 +430,22 @@ def send(self, fp=None):
         Sends the request via client session object
         """
         request = self.__build_request()
-        response = OpalResponse(self.client.session.send(request.prepare()))
+        try:
+            response = OpalResponse(self.client.session.send(request.prepare()))
 
-        if self._fail_on_error and response.code >= 400:
-            raise HTTPError(response)
+            if self._fail_on_error and response.code >= 400:
+                raise HTTPError(response)
 
-        if fp is not None:
-            fp.write(response.content)
+            if fp is not None:
+                fp.write(response.content)
 
-        return response
+            return response
+        finally:
+            # Close file handle if it was opened for upload
+            if self.files is not None and "file" in self.files:
+                file_tuple = self.files["file"]
+                if len(file_tuple) > 1 and hasattr(file_tuple[1], "close"):
+                    file_tuple[1].close()
 
 
 class OpalResponse:
@@ -470,7 +484,7 @@ def from_json(self):
     def pretty_json(self):
         return json.dumps(self.from_json(), sort_keys=True, indent=2)
 
-    def get_header(self, header: str) -> str:
+    def get_header(self, header: str) -> str | None:
         value = None
         if header in self.response.headers:
             value = self.response.headers[header]
@@ -481,7 +495,7 @@ def get_header(self, header: str) -> str:
     def get_location(self):
         return self.get_header("Location")
 
-    def extract_cookie_value(self, name: str):
+    def extract_cookie_value(self, name: str) -> str | None:
         if "set-cookie" in self.response.headers:
             if type(self.response.headers["set-cookie"]) == str:
                 return self._extract_cookie_single_value(
@@ -494,7 +508,7 @@ def extract_cookie_value(self, name: str):
                         return rval
         return None
 
-    def _extract_cookie_single_value(self, name: str, header: str):
+    def _extract_cookie_single_value(self, name: str, header: str) -> str | None:
         cookie_parts = header.split(";")
         if len(cookie_parts) > 0:
             cookie_parts = cookie_parts[0].split("=")
@@ -527,15 +541,15 @@ class MagmaNameResolver:
 
     def __init__(self, name):
         self.name = name
-        self.datasource, sep, remain = name.partition(".")
-        self.table, sep, self.variable = remain.partition(":")
+        self.datasource, _, remain = name.partition(".")
+        self.table, _, self.variable = remain.partition(":")
         if len(self.table) == 0:
             self.table = None
         if len(self.variable) == 0:
             self.variable = None
 
     def is_datasources(self):
-        return self.datasource == None or self.datasource == "*"
+        return self.datasource is None or self.datasource == "*"
 
     def is_datasource(self):
         if self.table:
@@ -602,30 +616,26 @@ class UriBuilder:
     """
 
     def __init__(self, path=[], params={}):
-        self.path = path
-        self.params = params
+        self._path = path
+        self._params = params
 
     def path(self, path):
-        self.path = path
+        self._path = path
         return self
 
     def segment(self, seg):
-        self.path.append(seg)
+        self._path.append(seg)
         return self
 
     def params(self, params):
-        self.params = params
+        self._params = params
         return self
 
     def query(self, key, value):
         val = "%s" % value
         if type(value) == bool:
             val = val.lower()
-        self.params.update(
-            [
-                (key, val),
-            ]
-        )
+        self._params.update([(key, val), ])
         return self
 
     def __str__(self):
@@ -635,15 +645,15 @@ def concat_segment(p, s):
         def concat_params(k):
             return "%s=%s" % (
                 urllib.parse.quote(k),
-                urllib.parse.quote(str(self.params[k])),
+                urllib.parse.quote(str(self._params[k])),
             )
 
         def concat_query(q, p):
             return "%s&%s" % (q, p)
 
-        p = urllib.parse.quote("/" + reduce(concat_segment, self.path))
-        if len(self.params):
-            q = reduce(concat_query, list(map(concat_params, list(self.params.keys()))))
+        p = urllib.parse.quote("/" + reduce(concat_segment, self._path))
+        if len(self._params):
+            q = reduce(concat_query, list(map(concat_params, list(self._params.keys()))))
             return "%s?%s" % (p, q)
         else:
             return p

From 7cd30eba6616c12365502d044f00a8927aa4ee7a Mon Sep 17 00:00:00 2001
From: Yannick Marcon <yannick.marcon@obiba.org>
Date: Sun, 8 Feb 2026 21:49:30 +0100
Subject: [PATCH 6/6] fix: support concurrent tests on taxonomies

---
 tests/test_taxonomy.py | 47 ++++++++++++++++++++++++++++++------------
 1 file changed, 34 insertions(+), 13 deletions(-)

diff --git a/tests/test_taxonomy.py b/tests/test_taxonomy.py
index 358dae8..28bc9bd 100644
--- a/tests/test_taxonomy.py
+++ b/tests/test_taxonomy.py
@@ -3,36 +3,57 @@
 from obiba_opal.system import TaxonomyService
 from obiba_opal.file import FileService
 from obiba_opal.core import HTTPError
+import shutil
+import os
+from uuid import uuid4
 
 class TestClass(unittest.TestCase):
 
   TEST_FILE = '/tmp/data.csv'
   TEST_ZIPPED_FILE = '/tmp/data.zip'
+  TEST_TAXONOMY_FILENAME = 'OBiBa_taxonomyTest.yml'
+  TEST_TAXONOMY_FILE = '/tmp/OBiBa_taxonomyTest.yml'
+  LOCAL_TAXONOMY_FILE = '/tmp/OBiBa_taxonomyTest.yml'
+  TEST_TAXONOMY_NAME = 'OBiBa_taxonomyTest'
 
   @classmethod
   def setup_class(cls):
     cls.service = TaxonomyService(make_client())
+    suffix = uuid4().hex
+    cls.TEST_TAXONOMY_FILENAME = f'OBiBa_taxonomyTest_{suffix}.yml'
+    cls.TEST_TAXONOMY_FILE = f'/tmp/{cls.TEST_TAXONOMY_FILENAME}'
+    cls.LOCAL_TAXONOMY_FILE = f'/tmp/{cls.TEST_TAXONOMY_FILENAME}'
+    cls.TEST_TAXONOMY_NAME = f'OBiBa_taxonomyTest_{suffix}'
 
   def test_1_importFile(self):
     try:
       fileService  = FileService(make_client())
-      fileService.upload_file('./tests/resources/OBiBa_taxonomyTest.yml', '/tmp')
-      response = fileService.file_info('/tmp/OBiBa_taxonomyTest.yml')
-      if response['name'] == 'OBiBa_taxonomyTest.yml':
-        response = self.service.importFile('/tmp/OBiBa_taxonomyTest.yml', True)
-        fileService.delete_file('/tmp/OBiBa_taxonomyTest.yml')
-        assert response.code == 201
-      else:
-        assert False
-
+      # Read and modify the taxonomy file to use randomized name
+      with open('./tests/resources/OBiBa_taxonomyTest.yml', 'r') as f:
+        content = f.read()
+      content = content.replace('"OBiBa_taxonomyTest"', f'"{self.TEST_TAXONOMY_NAME}"')
+      with open(self.LOCAL_TAXONOMY_FILE, 'w') as f:
+        f.write(content)
+      try:
+        fileService.upload_file(self.LOCAL_TAXONOMY_FILE, '/tmp')
+        response = fileService.file_info(self.TEST_TAXONOMY_FILE)
+        if response['name'] == self.TEST_TAXONOMY_FILENAME:
+          response = self.service.importFile(self.TEST_TAXONOMY_FILE, True)
+          fileService.delete_file(self.TEST_TAXONOMY_FILE)
+          assert response.code == 201
+        else:
+          assert False
+      finally:
+        if os.path.exists(self.LOCAL_TAXONOMY_FILE):
+          os.remove(self.LOCAL_TAXONOMY_FILE)
     except Exception as e:
       assert False
 
 
   def test_2_downloadTaxonomy(self):
     try:
-      response = self.service.download('OBiBa_taxonomyTest')
-      assert response.code == 200 and 'OBiBa_taxonomyTest' in str(response)
+      response = self.service.download(self.TEST_TAXONOMY_NAME)
+      assert response.code == 200 and self.TEST_TAXONOMY_NAME in str(response)
 
     except Exception as e:
       assert False
@@ -40,7 +61,7 @@ def test_2_downloadTaxonomy(self):
 
   def test_3_taxonomiesSummary(self):
     try:
-      name = 'OBiBa_taxonomyTest'
+      name = self.TEST_TAXONOMY_NAME
       response = self.service.summaries()
       assert response.code == 200 and len(list(filter(lambda t: t['name'] == name, response.from_json()['summaries']))) > 0
     except Exception as e:
@@ -48,7 +69,7 @@ def test_3_taxonomiesSummary(self):
 
   def test_4_deleteTaxonomy(self):
     try:
-      name = 'OBiBa_taxonomyTest'
+      name = self.TEST_TAXONOMY_NAME
       # keep around for interactive test
       # response = self.service.confirmAndDelete(name, lambda: self.service.delete(name))
       response = self.service.delete(name)