How to use CellExplorer with KiloSort4 outputs? #137
Description
Hi Dr. Petersen,
I’m reaching out to ask for your help regarding an issue we are experiencing while using CellExplorer with spike trains extracted with Kilosort 4. With previous versions of Kilosort (2.5 and 3), CellExplorer worked correctly when we set the basepath to the folder containing the Kilosort output files. However, when applying the same procedure with Kilosort 4 outputs, CellExplorer returns an error and does not complete the processing.In particular, it appears to recognize all channels as bad channels and fails in getWaveformsFromDat.m. I am attaching the log file produced during execution.
diaryCellExplorer.txt
I found a related issue (#124) on the GitHub Discussions page, but the proposed solution is not applicable in our case, since CellExplorer does not complete the metrics processing at all.
Could someone advise whether there is a recommended procedure or configuration to properly use CellExplorer with KiloSort 4 data?