From 4f1673d803f33364d300d16436c01b94505bbac6 Mon Sep 17 00:00:00 2001
From: Atsushi Togo <atz.togo@gmail.com>
Date: Sun, 8 Mar 2026 17:12:51 +0900
Subject: [PATCH] v0.13.1, rename cmd_root.py to velph_cmd_root.py

---
 doc/changelog.md                                        | 5 +++++
 doc/conf.py                                             | 2 +-
 pyproject.toml                                          | 2 +-
 src/phelel/velph/cli/el_bands/cmd_el_bands.py           | 2 +-
 src/phelel/velph/cli/generate/cmd_generate.py           | 2 +-
 src/phelel/velph/cli/init/cmd_init.py                   | 2 +-
 src/phelel/velph/cli/nac/cmd_nac.py                     | 2 +-
 src/phelel/velph/cli/ph_bands/cmd_ph_bands.py           | 2 +-
 src/phelel/velph/cli/ph_selfenergy/cmd_ph_selfenergy.py | 2 +-
 src/phelel/velph/cli/phelel/cmd_phelel.py               | 2 +-
 src/phelel/velph/cli/phono3py/cmd_phono3py.py           | 2 +-
 src/phelel/velph/cli/phonopy/cmd_phonopy.py             | 2 +-
 src/phelel/velph/cli/relax/cmd_relax.py                 | 2 +-
 src/phelel/velph/cli/selfenergy/cmd_selfenergy.py       | 2 +-
 src/phelel/velph/cli/transport/cmd_transport.py         | 2 +-
 src/phelel/velph/cli/{cmd_root.py => velph_cmd_root.py} | 0
 src/phelel/version.py                                   | 2 +-
 17 files changed, 20 insertions(+), 15 deletions(-)
 rename src/phelel/velph/cli/{cmd_root.py => velph_cmd_root.py} (100%)

diff --git a/doc/changelog.md b/doc/changelog.md
index 4b02be0..6e8f5ae 100644
--- a/doc/changelog.md
+++ b/doc/changelog.md
@@ -2,6 +2,11 @@
 
 # Change Log
 
+# Mar-8-2026: Version 0.13.1
+
+- Rename `cmd_root.py` to `velph_cmd_root.py` for safer module import when
+  calling velph command.
+
 # Mar-6-2026: Version 0.13.0
 
 - Maintenance release
diff --git a/doc/conf.py b/doc/conf.py
index e1db2b1..0c3e25c 100644
--- a/doc/conf.py
+++ b/doc/conf.py
@@ -11,7 +11,7 @@
 author = "Atsushi Togo"
 
 version = "0.13"
-release = "0.13.0"
+release = "0.13.1"
 
 # -- General configuration ---------------------------------------------------
 # https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration
diff --git a/pyproject.toml b/pyproject.toml
index 0f8ac75..483d551 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -25,7 +25,7 @@ license = {file = "LICENSE"}
 [project.scripts]
 phelel = "phelel.scripts.phelel:run"
 phelel-load = "phelel.scripts.phelel_load:run"
-velph = "phelel.velph.cli.cmd_root:cmd_root"
+velph = "phelel.velph.cli.velph_cmd_root:cmd_root"
 
 [tool.setuptools.dynamic]
 version = { attr = "phelel.version.__version__" }
diff --git a/src/phelel/velph/cli/el_bands/cmd_el_bands.py b/src/phelel/velph/cli/el_bands/cmd_el_bands.py
index 7099fc9..a4766cc 100644
--- a/src/phelel/velph/cli/el_bands/cmd_el_bands.py
+++ b/src/phelel/velph/cli/el_bands/cmd_el_bands.py
@@ -6,9 +6,9 @@
 
 import click
 
-from phelel.velph.cli.cmd_root import cmd_root
 from phelel.velph.cli.el_bands.generate import write_input_files
 from phelel.velph.cli.el_bands.plot import plot_el_bandstructures
+from phelel.velph.cli.velph_cmd_root import cmd_root
 from phelel.velph.utils.plot_eigenvalues import (
     cmd_plot_eigenvalues,
     eigenvalue_plot_options,
diff --git a/src/phelel/velph/cli/generate/cmd_generate.py b/src/phelel/velph/cli/generate/cmd_generate.py
index e069012..ce0a33e 100644
--- a/src/phelel/velph/cli/generate/cmd_generate.py
+++ b/src/phelel/velph/cli/generate/cmd_generate.py
@@ -9,7 +9,7 @@
 from phonopy.interface.calculator import write_crystal_structure
 from phonopy.structure.atoms import parse_cell_dict
 
-from phelel.velph.cli.cmd_root import cmd_root
+from phelel.velph.cli.velph_cmd_root import cmd_root
 
 
 #
diff --git a/src/phelel/velph/cli/init/cmd_init.py b/src/phelel/velph/cli/init/cmd_init.py
index f238ce6..75412cd 100644
--- a/src/phelel/velph/cli/init/cmd_init.py
+++ b/src/phelel/velph/cli/init/cmd_init.py
@@ -8,7 +8,6 @@
 
 import click
 
-from phelel.velph.cli.cmd_root import cmd_root
 from phelel.velph.cli.init.init import run_init
 from phelel.velph.cli.utils import (
     DefaultCellChoices,
@@ -18,6 +17,7 @@
     VelphInitOptions,
     VelphInitParams,
 )
+from phelel.velph.cli.velph_cmd_root import cmd_root
 from phelel.velph.utils.vasp import VaspPotcar
 
 
diff --git a/src/phelel/velph/cli/nac/cmd_nac.py b/src/phelel/velph/cli/nac/cmd_nac.py
index e9e1a75..5f70ec4 100644
--- a/src/phelel/velph/cli/nac/cmd_nac.py
+++ b/src/phelel/velph/cli/nac/cmd_nac.py
@@ -6,8 +6,8 @@
 
 import click
 
-from phelel.velph.cli.cmd_root import cmd_root
 from phelel.velph.cli.nac.generate import write_input_files
+from phelel.velph.cli.velph_cmd_root import cmd_root
 
 
 @cmd_root.group("nac")
diff --git a/src/phelel/velph/cli/ph_bands/cmd_ph_bands.py b/src/phelel/velph/cli/ph_bands/cmd_ph_bands.py
index d53056c..420231f 100644
--- a/src/phelel/velph/cli/ph_bands/cmd_ph_bands.py
+++ b/src/phelel/velph/cli/ph_bands/cmd_ph_bands.py
@@ -6,11 +6,11 @@
 
 import click
 
-from phelel.velph.cli.cmd_root import cmd_root
 from phelel.velph.cli.ph_bands.generate import (
     write_input_files as write_input_files_ph_bandstructures,
 )
 from phelel.velph.cli.ph_bands.plot import plot_ph_bandstructures
+from phelel.velph.cli.velph_cmd_root import cmd_root
 
 
 @cmd_root.group("ph_bands")
diff --git a/src/phelel/velph/cli/ph_selfenergy/cmd_ph_selfenergy.py b/src/phelel/velph/cli/ph_selfenergy/cmd_ph_selfenergy.py
index 2539c72..e74c85a 100644
--- a/src/phelel/velph/cli/ph_selfenergy/cmd_ph_selfenergy.py
+++ b/src/phelel/velph/cli/ph_selfenergy/cmd_ph_selfenergy.py
@@ -4,10 +4,10 @@
 
 import click
 
-from phelel.velph.cli.cmd_root import cmd_root
 from phelel.velph.cli.ph_selfenergy.dump_phono3py import dump_phono3py
 from phelel.velph.cli.selfenergy.generate import write_selfenergy_input_files
 from phelel.velph.cli.utils import check_fft
+from phelel.velph.cli.velph_cmd_root import cmd_root
 
 
 @cmd_root.group("ph_selfenergy")
diff --git a/src/phelel/velph/cli/phelel/cmd_phelel.py b/src/phelel/velph/cli/phelel/cmd_phelel.py
index 1abaf8a..641c839 100644
--- a/src/phelel/velph/cli/phelel/cmd_phelel.py
+++ b/src/phelel/velph/cli/phelel/cmd_phelel.py
@@ -9,11 +9,11 @@
 
 import phelel
 from phelel.cui.phelel_script import finalize_phelel
-from phelel.velph.cli.cmd_root import cmd_root
 from phelel.velph.cli.phelel.differentiate import run_derivatives
 from phelel.velph.cli.phelel.generate import write_supercell_input_files
 from phelel.velph.cli.phelel.init import run_init
 from phelel.velph.cli.phelel.phonopy import create_phonopy_yaml
+from phelel.velph.cli.velph_cmd_root import cmd_root
 from phelel.velph.utils.vasp import CutoffToFFTMesh
 
 
diff --git a/src/phelel/velph/cli/phono3py/cmd_phono3py.py b/src/phelel/velph/cli/phono3py/cmd_phono3py.py
index 3bfe044..8f00102 100644
--- a/src/phelel/velph/cli/phono3py/cmd_phono3py.py
+++ b/src/phelel/velph/cli/phono3py/cmd_phono3py.py
@@ -8,9 +8,9 @@
 import click
 import tomli
 
-from phelel.velph.cli.cmd_root import cmd_root
 from phelel.velph.cli.phono3py.generate import write_supercell_input_files
 from phelel.velph.cli.phono3py.init import run_init
+from phelel.velph.cli.velph_cmd_root import cmd_root
 
 
 @cmd_root.group("phono3py")
diff --git a/src/phelel/velph/cli/phonopy/cmd_phonopy.py b/src/phelel/velph/cli/phonopy/cmd_phonopy.py
index c1d3a8c..8dbe62e 100644
--- a/src/phelel/velph/cli/phonopy/cmd_phonopy.py
+++ b/src/phelel/velph/cli/phonopy/cmd_phonopy.py
@@ -7,9 +7,9 @@
 import click
 import tomli
 
-from phelel.velph.cli.cmd_root import cmd_root
 from phelel.velph.cli.phonopy.generate import write_supercell_input_files
 from phelel.velph.cli.phonopy.init import run_init
+from phelel.velph.cli.velph_cmd_root import cmd_root
 
 
 @cmd_root.group("phonopy")
diff --git a/src/phelel/velph/cli/relax/cmd_relax.py b/src/phelel/velph/cli/relax/cmd_relax.py
index 4488f6e..890ec6b 100644
--- a/src/phelel/velph/cli/relax/cmd_relax.py
+++ b/src/phelel/velph/cli/relax/cmd_relax.py
@@ -6,8 +6,8 @@
 
 import click
 
-from phelel.velph.cli.cmd_root import cmd_root
 from phelel.velph.cli.relax.generate import write_input_files
+from phelel.velph.cli.velph_cmd_root import cmd_root
 
 
 @cmd_root.group("relax")
diff --git a/src/phelel/velph/cli/selfenergy/cmd_selfenergy.py b/src/phelel/velph/cli/selfenergy/cmd_selfenergy.py
index 72a653a..9765a0e 100644
--- a/src/phelel/velph/cli/selfenergy/cmd_selfenergy.py
+++ b/src/phelel/velph/cli/selfenergy/cmd_selfenergy.py
@@ -4,9 +4,9 @@
 
 import click
 
-from phelel.velph.cli.cmd_root import cmd_root
 from phelel.velph.cli.selfenergy.generate import write_input_files
 from phelel.velph.cli.utils import check_fft
+from phelel.velph.cli.velph_cmd_root import cmd_root
 
 
 @cmd_root.group("selfenergy")
diff --git a/src/phelel/velph/cli/transport/cmd_transport.py b/src/phelel/velph/cli/transport/cmd_transport.py
index d61846b..6a7a66c 100644
--- a/src/phelel/velph/cli/transport/cmd_transport.py
+++ b/src/phelel/velph/cli/transport/cmd_transport.py
@@ -4,9 +4,9 @@
 
 import click
 
-from phelel.velph.cli.cmd_root import cmd_root
 from phelel.velph.cli.transport.generate import write_input_files
 from phelel.velph.cli.utils import check_fft
+from phelel.velph.cli.velph_cmd_root import cmd_root
 
 
 @cmd_root.group("transport")
diff --git a/src/phelel/velph/cli/cmd_root.py b/src/phelel/velph/cli/velph_cmd_root.py
similarity index 100%
rename from src/phelel/velph/cli/cmd_root.py
rename to src/phelel/velph/cli/velph_cmd_root.py
diff --git a/src/phelel/version.py b/src/phelel/version.py
index cd750a6..85d7b11 100644
--- a/src/phelel/version.py
+++ b/src/phelel/version.py
@@ -1,3 +1,3 @@
 """Version number."""
 
-__version__ = "0.13.0"
+__version__ = "0.13.1"