processing data from reference site, which were not included in the template creation step

[kcho]

Hi Tashrif,

I was wondering if dMRIharmonization/harmonization.py can apply the same preprocessing (resampling) to data from the reference site data, that were not included in the template creation step. I cannot find this in the documentation. Would you direct me to this part of the documentation if I'm missing this please?

Thanks

[tashrifbillah]

Hi Kevin,

if dMRIharmonization/harmonization.py can apply the same preprocessing (resampling) to data from the reference site data, that were not included in the template creation step

Firstly, we don't have anything that can do just resampling on the data that were not included in the template creation step. However, our pipeline is equipped to do all of bvalue mapping, resampling, and spherical harmonics fitting on the data that were not included in the template creation step. All you have to do is to provide the complete list of reference images during the harmonization step.

The above feature is available with this software as is. Use pnlpipe3 contained dMRIharmonization or pull our latest changes from the default branch. After running, look for reconstructed_* files in reference directories.

I cannot find this in the documentation.

I didn't find it worthwhile to include it in the doc so far but I can.

[kcho]

Thanks Tashrif. Other users may have the same question I had. I think a sentence or two about this would be helpful for people like me.