fmri_preprocessing/pyproject.toml at main · rachmorse/fmri_preprocessing · GitHub

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[tool.poetry]
name = "preprocessing"
version = "0.0.1"
description = ""
authors = []
repository = "https://github.com/rachmorse/fmri_preprocessing.git"
readme = "README.md"

[tool.poetry.dependencies]
python = ">=3.10"
nipype = "^1.9.1"
numpy = "^2.2.0"
nitime = "0.8"
seaborn = "^0.13.2"
nibabel = "^5.3.2"
ruff = "^0.14.8"

[tool.poetry.group.dev.dependencies]
pytest = ">=6,<7"
pytest-cov = ">=3.0,<4.0"
pre-commit = "^3.4.0"

[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"

[tool.pytest.ini_options]
testpaths = ["tests"]

[tool.ruff]
target-version = "py39"
line-length = 120
include = ["src/*"]

[tool.ruff.lint]
select = ["E", "F", "B", "D", "W", "C90", "N", "A", "RUF", "SIM", "PL"]
ignore = [
  "E501",  # Line too long (more than 79 characters).
  "B905",  # Ignore zip without explicit strict.
  "C901",  # Function is too complex (complexity is measured by cyclomatic complexity).
  "D107",  # Missing docstring in a public __init__ method.
  "RUF001",  # Character strings contains ambiguous unicode character.
  "PLR0913"  # Too many arguments in function or method (function has too many parameters).
]
extend-select = ["I"]
mccabe.max-complexity = 10
pydocstyle.convention = "google"

[tool.ruff.lint.per-file-ignores]
"tests/*" = ["S101"]

[tool.ruff.format]
docstring-code-format = true
preview = true

[tool.pydoclint]
style = "google"
arg-type-hints-in-signature = true
arg-type-hints-in-docstring = false
skip-checking-short-docstrings = false
check-return-types = false
check-yield-types = false

[tool.interrogate]
ignore-init-method = true
ignore-init-module = false
ignore-magic = false
ignore-semiprivate = false
ignore-private = false
ignore-property-decorators = false
ignore-module = false
ignore-nested-functions = false
ignore-nested-classes = true
ignore-setters = false
fail-under = 100
exclude = ["docs", "build", "src/tests"]
ignore-regex = [
  "^_init_*",
  "^_to_lower$",
  "^_to_datetime$",
  "^get$",
  "^mock_.*",
  ".*BaseClass.*",
]
# possible values: 0 (minimal output), 1 (-v), 2 (-vv)
verbose = 2
quiet = false
whitelist-regex = []
color = true
omit-covered-files = false

[tool.coverage.report]
show_missing = true
skip_empty = true

[tool.coverage.run]
branch = true
source = ["src"]