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import dataclasses
from typing import List
import streamlit as st
import streamlit_permalink as stp
from sqlmodel import Session
import thoth as th
from thoth.base import convert_to_timeseries, TimeSeries, Point
from thoth.util import viz
ENGINE = th.build_engine()
def about_page():
md = """
# Welcome to thoth! 👋
In a few easy steps you'll create an e2e data quality monitoring platform.
### Useful links:
- [Thoth homepage](https://github.com/rafaelleinio/thoth)
- [Notebook examples](https://github.com/rafaelleinio/thoth/tree/main/examples)
- [PyPI](https://pypi.org/project/pythoth/)
- Docs (WIP 🚧)
Made with ❤️ by [@rafaelleinio](https://github.com/rafaelleinio)
"""
st.markdown(md)
def is_db_initialized() -> bool:
return th.is_db_initialized()
def get_dataset_uris() -> List[str]:
with Session(ENGINE) as session:
datasets = th.get_datasets(session=session)
return [d.uri for d in datasets]
def get_dataset(dataset_uri: str) -> th.Dataset:
with Session(ENGINE) as session:
dataset = th.get_dataset(dataset_uri=dataset_uri, session=session)
return dataset
def get_metric_ts_from_profiling(
metric: th.profiler.Metric, profiling: List[th.profiler.ProfilingReport]
) -> TimeSeries:
return TimeSeries(
metric=metric,
points=[
Point(ts=report.ts, value=report.get_profiling_value(metric=metric).value)
for report in profiling
],
)
def get_metric_score_ts_from_scoring(
metric: th.profiler.Metric, scoring: List[th.anomaly.AnomalyScoring]
) -> TimeSeries:
return TimeSeries(
metric=metric,
points=[
Point(
ts=anomaly_scoring.ts,
value=anomaly_scoring.get_metric_score(metric=metric).value,
)
for anomaly_scoring in scoring
],
)
def get_metric_predicted_ts_from_scoring(
metric: th.profiler.Metric, scoring: List[th.anomaly.AnomalyScoring]
) -> TimeSeries:
return TimeSeries(
metric=metric,
points=[
Point(
ts=anomaly_scoring.ts,
value=anomaly_scoring.get_metric_score(metric=metric).predicted,
)
for anomaly_scoring in scoring
],
)
@dataclasses.dataclass
class _InstanceTimeSeries:
instance: str
time_series: List[TimeSeries]
def build_profiling_view(dataset_uri: str, selected_instances: List[str]):
st.markdown("## Profiling metrics")
# fetch data
with Session(ENGINE) as session:
profiling = th.select_profiling(dataset_uri=dataset_uri, session=session)
time_series = convert_to_timeseries(profiling)
# time-serialize
instance_time_series_collection = [
_InstanceTimeSeries(
instance=instance,
time_series=[ts for ts in time_series if ts.metric.instance == instance],
)
for instance in selected_instances
]
# build expander sections
for instance_time_series in instance_time_series_collection:
expander = st.expander(
label=f"Instance '{instance_time_series.instance}'", expanded=True
)
for ts in instance_time_series.time_series:
expander.plotly_chart(viz.plot_ts(ts=ts))
def build_optimization_view(dataset_uri: str, selected_instances: List[str]):
st.markdown("## Dataset Anomaly Optimization")
# fetch data
with Session(ENGINE) as session:
optimization = th.get_optimization(dataset_uri=dataset_uri, session=session)
if not optimization:
st.markdown("### ⚠️Optimization or Scoring not found for this dataset!")
return
st.markdown(f"### Target confidence = `{optimization.confidence}`")
# time-serialize
@dataclasses.dataclass
class InstanceOptimization:
instance: str
metric_optimizations: List[th.anomaly.MetricOptimization]
instance_optimizations = [
InstanceOptimization(
instance=instance,
metric_optimizations=[
mo
for mo in optimization.metric_optimizations
if mo.metric.instance == instance
],
)
for instance in selected_instances
]
# build expander sections
for instance_optimization in instance_optimizations:
expander = st.expander(
label=f"Instance '{instance_optimization.instance}'", expanded=True
)
for mo in instance_optimization.metric_optimizations:
expander.markdown(f"#### Metric '{mo.metric.name}'")
expander.markdown(
f"- Best model for this metric: `{mo.best_model_name}`\n"
f"- Best anomaly scoring threshold for the model: `{mo.threshold}`\n"
)
expander.plotly_chart(
figure_or_data=viz.plot_validation_results(metric_optimization=mo)
)
expander.plotly_chart(
figure_or_data=viz.plot_validation_errors(metric_optimization=mo)
)
expander.markdown("##### Models performance overview:")
expander.table(
data=viz.create_metric_optimization_table(metric_optimization=mo)
)
expander.markdown("___________________")
@dataclasses.dataclass
class MetricScoringTimeSeries:
metric: th.profiler.Metric
anomaly_threshold: float
scoring_points: List[Point]
observed_points: List[Point]
predicted_points: List[Point]
@dataclasses.dataclass
class InstanceMetricScoring:
instance: str
metric_scoring_time_series_collection: List[MetricScoringTimeSeries]
def build_scoring_data(
selected_instances: List[str],
profiling: List[th.profiler.ProfilingReport],
optimization: th.anomaly.AnomalyOptimization,
scoring: List[th.anomaly.AnomalyScoring],
) -> List[InstanceMetricScoring]:
instance_metric_scoring_collection = []
for instance in selected_instances:
metric_scoring_time_series_collection = []
metrics = [
metric_optimization.metric
for metric_optimization in optimization.metric_optimizations
if metric_optimization.metric.instance == instance
]
for metric in metrics:
metric_scoring_time_series_collection.append(
MetricScoringTimeSeries(
metric=metric,
anomaly_threshold=optimization.get_metric_optimization(
metric=metric
).threshold,
scoring_points=get_metric_score_ts_from_scoring(
metric=metric, scoring=scoring
).points,
observed_points=get_metric_ts_from_profiling(
metric=metric, profiling=profiling
).points,
predicted_points=get_metric_predicted_ts_from_scoring(
metric=metric, scoring=scoring
).points,
)
)
instance_metric_scoring_collection.append(
InstanceMetricScoring(
instance=instance,
metric_scoring_time_series_collection=(
metric_scoring_time_series_collection
),
)
)
return instance_metric_scoring_collection
def build_scoring_view(dataset_uri: str, selected_instances: List[str]):
st.markdown("## Anomaly Scoring")
# fetch data
with Session(ENGINE) as session:
optimization = th.get_optimization(dataset_uri=dataset_uri, session=session)
scoring = th.get_scoring(dataset_uri=dataset_uri, session=session)
if not optimization or not scoring:
st.markdown("### ⚠️Optimization or Scoring not found for this dataset!")
return
start_ts = scoring[0].ts
profiling = th.select_profiling(
dataset_uri=dataset_uri, start_ts=start_ts, session=session
)
# time-serialize
instance_metric_scoring_collection = build_scoring_data(
selected_instances=selected_instances,
optimization=optimization,
profiling=profiling,
scoring=scoring,
)
# build expander sections
for instance_metric_scoring in instance_metric_scoring_collection:
expander = st.expander(
label=f"Instance '{instance_metric_scoring.instance}'", expanded=True
)
for (
metric_scoring_time_series
) in instance_metric_scoring.metric_scoring_time_series_collection:
expander.markdown(f"#### Metric '{metric_scoring_time_series.metric.name}'")
expander.markdown(
"🔴 **Anomaly detected for last timestamp batch "
f"({metric_scoring_time_series.scoring_points[-1].ts.isoformat()})!**"
if metric_scoring_time_series.scoring_points[-1].value
> metric_scoring_time_series.anomaly_threshold
else (
"🟢 Last timestamp batch "
f"({metric_scoring_time_series.scoring_points[-1].ts.isoformat()}) "
f"is according expectations"
)
)
expander.plotly_chart(
viz.plot_metric_scoring(
metric=metric_scoring_time_series.metric,
threshold=metric_scoring_time_series.anomaly_threshold,
scoring_points=metric_scoring_time_series.scoring_points,
)
)
expander.plotly_chart(
viz.plot_predicted_values(
metric=metric_scoring_time_series.metric,
threshold=metric_scoring_time_series.anomaly_threshold,
predicted_points=metric_scoring_time_series.predicted_points,
observed_points=metric_scoring_time_series.observed_points,
)
)
expander.markdown("___________________")
def build_dataset_metadata_text(dataset: th.Dataset) -> str:
metrics_list_text = " - " + "\n - ".join(
f"`{str(metric)}`" for metric in sorted(dataset.metrics)
)
columns_list_text = " - " + "\n - ".join(f"`{c}`" for c in dataset.columns)
return (
f"- **Timestamp column**: `{dataset.ts_column}`\n"
f"- **Profiling aggregation granularity**: `{dataset.granularity}`\n"
f"- **Feature columns**: \n"
f"{columns_list_text}\n"
"- **Profiling metrics**:\n"
f"{metrics_list_text}"
)
def home_page():
if not is_db_initialized():
st.error("The Metrics Repository db is not yet initialized!", icon="🚨")
return
datasets = get_dataset_uris()
st.markdown("# Select dataset")
if not datasets:
st.warning(
"There is still no dataset registered in the Metrics Repository, "
"why don't you start profiling? 🤗",
icon="⚠️",
)
return
with stp.form("dataset-form"):
dataset_uri = stp.selectbox(
label="Dataset:", options=datasets, url_key="dataset_uri"
)
dataset = get_dataset(dataset_uri=dataset_uri)
expander = st.expander(label="Dataset metadata", expanded=False)
expander.markdown(build_dataset_metadata_text(dataset=dataset))
instances = list(dataset.get_instances())
selected_instances = stp.multiselect(
label="Select instances:",
options=instances,
default=instances,
url_key="instances",
)
view_option = stp.radio(
label="Select view:",
options=["👤 Profiling", "📈 Optimization", "💯 Scoring"],
index=0,
url_key="view",
)
submit_button = stp.form_submit_button(label="✨ Get me the data!")
if submit_button:
if view_option == "👤 Profiling":
build_profiling_view(
dataset_uri=dataset_uri, selected_instances=selected_instances
)
if view_option == "📈 Optimization":
build_optimization_view(
dataset_uri=dataset_uri, selected_instances=selected_instances
)
if view_option == "💯 Scoring":
build_scoring_view(
dataset_uri=dataset_uri, selected_instances=selected_instances
)
SUBPAGES = {
"🏠️ Home": home_page,
"❓ About": about_page,
}
def sidebar():
with st.sidebar:
st.image(
"https://i.imgur.com/UJwvBFC.png",
caption="data profiling monitoring platform",
)
# st.sidebar.subheader("Index")s
option = stp.radio(
"Index:",
SUBPAGES.keys(),
index=0,
url_key="page",
on_change=lambda: st.experimental_set_query_params(),
)
st.sidebar.markdown("---")
SUBPAGES[option]()
def main():
st.set_page_config(
page_title="Thoth Dashboard",
page_icon="https://i.imgur.com/aIYgdab.png",
layout="wide",
)
sidebar()
if __name__ == "__main__":
main()