When following the README example as a new user:
drugbank_db <- parseDrugBank("data/drugbank.xml")
onsides_db <- parseOnSIDES("data/onsides/")
final_db <- drugbank_db %>%
merge_drugbank_onsides(onsides_db)
the returned dvobject from parseDrugBank() does not include the external_identifiers table. As a result, merge_drugbank_onsides() fails.
It may be helpful to clarify in the README whether additional node_options are required to parse all necessary tables for merging, or whether the default parsing only includes general drug information.
When following the README example as a new user:
drugbank_db <- parseDrugBank("data/drugbank.xml")
onsides_db <- parseOnSIDES("data/onsides/")
final_db <- drugbank_db %>%
merge_drugbank_onsides(onsides_db)
the returned dvobject from parseDrugBank() does not include the external_identifiers table. As a result, merge_drugbank_onsides() fails.
It may be helpful to clarify in the README whether additional node_options are required to parse all necessary tables for merging, or whether the default parsing only includes general drug information.