From 2304082f8ab63a08fbb38a4652609c87eed697c6 Mon Sep 17 00:00:00 2001 From: Sage Date: Wed, 12 Mar 2025 18:07:46 -0700 Subject: [PATCH 1/6] start porting to uv + setuptools --- pyproject.toml | 34 ++ setup.py | 33 -- uv.lock | 1231 ++++++++++++++++++++++++++++++++++++++++++++++++ 3 files changed, 1265 insertions(+), 33 deletions(-) create mode 100644 uv.lock diff --git a/pyproject.toml b/pyproject.toml index fa9ae8d..4f1ed31 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,3 +1,37 @@ +[project] +name = "science-synapse" +version = "0.11.0" +description = "Client library and CLI for the Synapse API" +authors = [{name = "Science Team", email = "team@science.xyz"}] +readme = "README.md" +license = {file = "LICENSE"} +requires-python = ">=3.9" +dependencies = [ + "build>=1.2.2.post1", + "coolname>=2.2.0", + "crcmod>=1.7", + "dearpygui>=2.0.0", + "grpcio>=1.71.0", + "grpcio-tools>=1.71.0", + "numpy>=2.0.0", + "pandas>=2.2.0", + "pre-commit>=4.1.0", + "protobuf>=5.29", + 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name = "crcmod" }, - { name = "cython" }, { name = "dearpygui" }, { name = "grpcio" }, { name = "grpcio-tools" }, @@ -1009,12 +986,16 @@ dependencies = [ { name = "scipy", version = "1.15.2", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.10'" }, ] +[package.dev-dependencies] +dev = [ + { name = "ruff" }, +] + [package.metadata] requires-dist = [ { name = "build", specifier = ">=1.2.2.post1" }, { name = "coolname", specifier = ">=2.2.0" }, { name = "crcmod", specifier = ">=1.7" }, - { name = "cython", specifier = ">=3.0.12" }, { name = "dearpygui", specifier = ">=2.0.0" }, { name = "grpcio", specifier = ">=1.71.0" }, { name = "grpcio-tools", specifier = ">=1.71.0" }, @@ -1033,6 +1014,9 @@ requires-dist = [ { name = "scipy", specifier = ">=1.13.1" }, ] +[package.metadata.requires-dev] +dev = [{ name = "ruff", specifier = ">=0.9.10" }] + [[package]] name = "scipy" version = "1.13.1" From b973e3a9ba71d07d7896009b45cc535b1e971a98 Mon Sep 17 00:00:00 2001 From: Sage Date: Fri, 14 Mar 2025 16:26:33 -0700 Subject: [PATCH 3/6] other cleanup --- .gitignore | 2 +- .python-version | 1 - pyproject.toml | 2 +- setup.py | 3 +-- uv.lock | 8 +++++--- 5 files changed, 8 insertions(+), 8 deletions(-) delete mode 100644 .python-version diff --git a/.gitignore b/.gitignore index f6a6e0d..56299ca 100644 --- a/.gitignore +++ b/.gitignore @@ -97,7 +97,7 @@ ipython_config.py # pyenv # For a library or package, you might want to ignore these files since the code is # intended to run in multiple environments; otherwise, check them in: -# .python-version +.python-version # pipenv # According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control. diff --git a/.python-version b/.python-version deleted file mode 100644 index 2c07333..0000000 --- a/.python-version +++ /dev/null @@ -1 +0,0 @@ -3.11 diff --git a/pyproject.toml b/pyproject.toml index 49a1eda..68203f7 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -15,7 +15,6 @@ dependencies = [ "grpcio-tools>=1.71.0", "numpy>=2.0.0", "pandas>=2.2.0", - "pre-commit>=4.1.0", "protobuf>=5.29", "protoletariat>=3.3.9", "pyqt5>=5.15.11", @@ -35,6 +34,7 @@ build-backend = "setuptools.build_meta" [dependency-groups] dev = [ "ruff>=0.9.10", + "pre-commit>=4.1.0", ] [project.scripts] diff --git a/setup.py b/setup.py index fded9cd..3daaddf 100644 --- a/setup.py +++ b/setup.py @@ -1,6 +1,5 @@ -from setuptools import setup, find_packages, Extension +from setuptools import setup, Extension from Cython.Build import cythonize -from pathlib import Path import os extra_compile_args = [] diff --git a/uv.lock b/uv.lock index 7a47949..cee8ea9 100644 --- a/uv.lock +++ b/uv.lock @@ -972,7 +972,6 @@ dependencies = [ { name = "numpy", version = "2.0.2", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.10'" }, { name = "numpy", version = "2.2.3", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.10'" }, { name = "pandas" }, - { name = "pre-commit" }, { name = "protobuf" }, { name = "protoletariat" }, { name = "pyqt5" }, @@ -988,6 +987,7 @@ dependencies = [ [package.dev-dependencies] dev = [ + { name = "pre-commit" }, { name = "ruff" }, ] @@ -1001,7 +1001,6 @@ requires-dist = [ { name = "grpcio-tools", specifier = ">=1.71.0" }, { name = "numpy", specifier = ">=2.0.0" }, { name = "pandas", specifier = ">=2.2.0" }, - { name = "pre-commit", specifier = ">=4.1.0" }, { name = "protobuf", specifier = ">=5.29" }, { name = "protoletariat", specifier = ">=3.3.9" }, { name = "pyqt5", specifier = ">=5.15.11" }, @@ -1015,7 +1014,10 @@ requires-dist = [ ] [package.metadata.requires-dev] -dev = [{ name = "ruff", specifier = ">=0.9.10" }] +dev = [ + { name = "pre-commit", specifier = ">=4.1.0" }, + { name = "ruff", specifier = ">=0.9.10" }, +] [[package]] name = "scipy" From 6d0277b5f2c1ea2a74d408d59392fc28e86ecbac Mon Sep 17 00:00:00 2001 From: Sage Date: Mon, 17 Mar 2025 11:00:57 -0700 Subject: [PATCH 4/6] update ci --- .github/workflows/main.yml | 28 ++++++++++++++++++---------- 1 file changed, 18 insertions(+), 10 deletions(-) diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index 6866505..3368999 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -18,17 +18,20 @@ jobs: submodules: recursive token: ${{ secrets.GH_TOKEN }} + - name: Install uv + uses: astral-sh/setup-uv@v5 + with: + version: "0.6.6" + - name: Set up Python uses: actions/setup-python@v4 with: - python-version: "3.12" + python-version-file: "pyproject.toml" - name: Install dependencies run: | - python -m pip install --upgrade pip - pip install -r requirements.txt + uv sync --all-extras --dev make - pip install -e . - name: Run tests with pytest run: | @@ -44,22 +47,27 @@ jobs: submodules: recursive token: ${{ secrets.GH_TOKEN }} + - name: Install uv + uses: astral-sh/setup-uv@v5 + with: + version: "0.6.6" + - name: Set up Python uses: actions/setup-python@v4 with: - python-version: "3.12" + python-version-file: "pyproject.toml" - name: Install dependencies run: | - python -m pip install --upgrade pip - pip install -r requirements.txt + uv sync --all-extras --dev make - pip install -e . - synapse-sim --iface-ip 127.0.0.1 --rpc-port 50051 & + - name: Run examples + run: | + uv run synapse-sim --iface-ip 127.0.0.1 --rpc-port 50051 & sleep 2 - python synapse/examples/stream_out.py 127.0.0.1:50051 + uv run synapse/examples/stream_out.py 127.0.0.1:50051 kill $(jobs -p) From 800fadd9698bbb3d9c3df3b2974863089d839a26 Mon Sep 17 00:00:00 2001 From: Sage Date: Mon, 17 Mar 2025 11:02:42 -0700 Subject: [PATCH 5/6] use uv to run protogen --- .github/workflows/main.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index 3368999..d9cd152 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -31,7 +31,7 @@ jobs: - name: Install dependencies run: | uv sync --all-extras --dev - make + uv run make - name: Run tests with pytest run: | @@ -60,7 +60,7 @@ jobs: - name: Install dependencies run: | uv sync --all-extras --dev - make + uv run make - name: Run examples run: | From 35ce39bde78ef75236ce50b0c7c94457d2bca2ae Mon Sep 17 00:00:00 2001 From: Sage Date: Mon, 17 Mar 2025 11:05:05 -0700 Subject: [PATCH 6/6] and tests --- .github/workflows/main.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index d9cd152..fd6de1e 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -35,7 +35,7 @@ jobs: - name: Run tests with pytest run: | - pytest -v + uv run pytest -v test-examples: runs-on: ubuntu-latest