From b964fbb369e3f9742ec3b238956765ef3e9c7746 Mon Sep 17 00:00:00 2001
From: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Date: Mon, 16 Mar 2026 18:03:12 +0000
Subject: [PATCH 1/3] Update instance repo from cookiecutter template

---
 .cruft.json             | 4 ++--
 .pre-commit-config.yaml | 6 +++---
 2 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/.cruft.json b/.cruft.json
index 9d44c3f..186a667 100644
--- a/.cruft.json
+++ b/.cruft.json
@@ -1,6 +1,6 @@
 {
   "template": "/home/runner/work/cookiecutter-scverse/cookiecutter-scverse",
-  "commit": "1da1d71043735a63d87f13e16caf5d9b90b3ba56",
+  "commit": "fc3197f497dbc0121465ecca14fccf34ae26b921",
   "checkout": null,
   "context": {
     "cookiecutter": {
@@ -36,7 +36,7 @@
         "trim_blocks": true
       },
       "_template": "/home/runner/work/cookiecutter-scverse/cookiecutter-scverse",
-      "_commit": "1da1d71043735a63d87f13e16caf5d9b90b3ba56"
+      "_commit": "fc3197f497dbc0121465ecca14fccf34ae26b921"
     }
   },
   "directory": null
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index e5325f7..cac19ee 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -7,16 +7,16 @@ default_stages:
 minimum_pre_commit_version: 2.16.0
 repos:
   - repo: https://github.com/biomejs/pre-commit
-    rev: v2.4.6
+    rev: v2.4.7
     hooks:
       - id: biome-format
         exclude: ^\.cruft\.json$ # inconsistent indentation with cruft - file never to be modified manually.
   - repo: https://github.com/tox-dev/pyproject-fmt
-    rev: v2.16.2
+    rev: v2.19.0
     hooks:
       - id: pyproject-fmt
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.15.5
+    rev: v0.15.6
     hooks:
       - id: ruff-check
         types_or: [python, pyi, jupyter]

From 7b509f10dfae5ec159c0625d9fb07885b0338a99 Mon Sep 17 00:00:00 2001
From: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Date: Wed, 18 Mar 2026 09:28:35 +0000
Subject: [PATCH 2/3] Update instance repo from cookiecutter template

---
 .cruft.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.cruft.json b/.cruft.json
index 186a667..e60e1d7 100644
--- a/.cruft.json
+++ b/.cruft.json
@@ -1,6 +1,6 @@
 {
   "template": "/home/runner/work/cookiecutter-scverse/cookiecutter-scverse",
-  "commit": "fc3197f497dbc0121465ecca14fccf34ae26b921",
+  "commit": "70e3503335a19680d5fd3c7abf8d7fbd41aa3318",
   "checkout": null,
   "context": {
     "cookiecutter": {
@@ -36,7 +36,7 @@
         "trim_blocks": true
       },
       "_template": "/home/runner/work/cookiecutter-scverse/cookiecutter-scverse",
-      "_commit": "fc3197f497dbc0121465ecca14fccf34ae26b921"
+      "_commit": "70e3503335a19680d5fd3c7abf8d7fbd41aa3318"
     }
   },
   "directory": null

From 5683867faf39caa891c9241f0039cbc99c2372da Mon Sep 17 00:00:00 2001
From: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Date: Wed, 18 Mar 2026 09:45:41 +0000
Subject: [PATCH 3/3] Update instance repo from cookiecutter template

---
 .cruft.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.cruft.json b/.cruft.json
index e60e1d7..33c77b9 100644
--- a/.cruft.json
+++ b/.cruft.json
@@ -1,6 +1,6 @@
 {
   "template": "/home/runner/work/cookiecutter-scverse/cookiecutter-scverse",
-  "commit": "70e3503335a19680d5fd3c7abf8d7fbd41aa3318",
+  "commit": "3f67b214a79e8e40e3012c63b1a89143d8ed13be",
   "checkout": null,
   "context": {
     "cookiecutter": {
@@ -36,7 +36,7 @@
         "trim_blocks": true
       },
       "_template": "/home/runner/work/cookiecutter-scverse/cookiecutter-scverse",
-      "_commit": "70e3503335a19680d5fd3c7abf8d7fbd41aa3318"
+      "_commit": "3f67b214a79e8e40e3012c63b1a89143d8ed13be"
     }
   },
   "directory": null