CHANGELOG.md

## [Unreleased]

### Fixed

- Duplicate-class analysis no longer recommends consolidating similarly named
  infrastructure classes across the deliberately independent `doctor-agent`,
  `repair-agent`, and `validator-agent` execution planes. Pair-aware filtering
  preserves findings within one agent, while generated checkouts below
  `work/repos/` are excluded as non-canonical copies. Regression coverage
  verifies TOON metrics and planfile ticket generation.
- `SmellDetector._detect_data_clumps()` had the same cross-file false-positive
  bug as `_detect_shotgun_surgery()` (previous entry, same root cause): it
  grouped functions by their argument-*name* set alone, ignoring which file
  each function was in. A common constructor shape like
  `(self, project_root, config)` is conventionally reused independently by
  unrelated classes across unrelated files/packages (any two classes that
  each take a project root and a config object) — but 2+ such coincidental,
  unrelated occurrences anywhere in the analyzed tree falsely triggered
  "Data Clump" (reproduced live: `wup.anomaly_detector.AnomalyDetector.
  __init__` and `wup.testql_monitor.TestQLMonitor.__init__` — two unrelated
  classes in unrelated files — flagged as clumped on `project_root, self,
  config`). A genuine data clump — args that should become one object — is
  a same-file (usually same-class) phenomenon; fixed by grouping by
  `(file, argument-set)` instead of the argument-set alone. Verified against
  the real project that surfaced this: data-clump smells in `wup` dropped
  from findings spanning unrelated files down to 16 genuine, correctly
  file-scoped findings. 4 new tests (`tests/test_smells_data_clumps.py`).
  Full suite (286 tests) passes.
- `psutil` is imported directly by `code2llm/core/config.py` (loaded via the
  package's own top-level `__init__.py`), but was never declared in
  `pyproject.toml`'s `dependencies` — a clean install (`uv sync` respecting
  only the lockfile, or a fresh `pip install code2llm`) could not even
  `import code2llm` (2026-07-06: surfaced once `goal`'s own test-dependency
  check stopped silently accepting a broken environment — see the
  `goal`/`_ensure_python_test_dependency` fix in the same session — and a
  real `uv sync` ran for the first time in a while). Added
  `"psutil>=5.9"` to `dependencies` and regenerated `uv.lock`. Verified:
  full suite (282 tests) passes from a `uv sync --all-extras`-clean venv.
- `requires-python` was `>=3.8`, but `code2llm[dev]`'s own `goal>=2.1.218`
  dependency only supports `>=3.10` — `uv lock`/`uv sync` failed outright
  with an unsatisfiable-requirements error for any resolution covering the
  full advertised range. Bumped to `>=3.10` to match reality.
- `SmellDetector._detect_shotgun_surgery()` grouped mutations by variable
  *name* alone, ignoring which file each mutation was in. A generic local
  name (`args`, `data`, `client`, `client_id`, `default_file`, `errors`) is
  conventionally reused as an independent local variable in unrelated
  functions across unrelated files/packages — every argparse-based
  `main()` has an `args` — but 5+ such coincidental, unrelated occurrences
  anywhere in the analyzed tree falsely triggered "Shotgun Surgery"
  (reproduced live: 40+ false-positive planfile tickets generated for a
  single monorepo, including `args` in a 40-line, one-function CLI file
  reported as "spans 8 functions" — the other 7 were unrelated `args`
  locals in unrelated files elsewhere in the tree). Real shotgun surgery —
  one variable/attribute whose change genuinely ripples across many call
  sites — is a same-file phenomenon; fixed by grouping mutations by
  `(file, variable)` instead of `variable` alone, which preserves genuine
  same-file findings while dropping the cross-file name-collision noise.
  Verified against the real monorepo that surfaced this: shotgun-surgery
  smells dropped from 8+ false positives down to 3 genuine, correctly
  file-scoped findings. 4 new tests
  (`tests/test_smells_shotgun_surgery.py`) — this detector had zero prior
  test coverage. Full suite (282 tests) passes.

## [0.5.176] - 2026-08-06

### Docs
- Update README.md

### Test
- Update tests/test_dup_groups.py

### Other
- Update code2llm/exporters/flow_constants.py
- Update code2llm/exporters/planfile_tickets.py

## [0.5.175] - 2026-08-01

### Docs
- Update .intent-koru-verify/runs/20260730T201453Z-2c0e0243/CODE_CHANGE.review.md
- Update .intent-koru-verify/runs/20260730T201453Z-2c0e0243/team-summary.md
- Update CHANGELOG.md
- Update README.md

### Test
- Update tests/test_dup_groups.py
- Update tests/test_mermaid_png.py

### Other
- Update .intent-koru-verify/latest.json
- Update .intent-koru-verify/runs/20260730T172249Z-c4cbc2a9/code-change-plans.json
- Update .intent-koru-verify/runs/20260730T201453Z-2c0e0243/CODE_CHANGE.review.json
- Update .intent-koru-verify/runs/20260730T201453Z-2c0e0243/ast.intent.jsonl
- Update .intent-koru-verify/runs/20260730T201453Z-2c0e0243/changelog.intent.jsonl
- Update .intent-koru-verify/runs/20260730T201453Z-2c0e0243/code-change-plans.json
- Update .intent-koru-verify/runs/20260730T201453Z-2c0e0243/code-change-source-patches.json
- Update .intent-koru-verify/runs/20260730T201453Z-2c0e0243/communication.intent.jsonl
- Update .intent-koru-verify/runs/20260730T201453Z-2c0e0243/configuration.intent.jsonl
- Update .intent-koru-verify/runs/20260730T201453Z-2c0e0243/diagnostics.json
- ... and 21 more files

## [0.5.174] - 2026-07-13

### Docs
- Update README.md

### Other
- Update .koru/event-store.jsonl
- Update .nlp2dsl/environment.doql.less
- Update .nlp2dsl/registry/environment.doql.less
- Update .planfile/.koru/autonomous-state.json
- Update .planfile/.koru/autonomy-telemetry.json
- Update .planfile/.koru/event-store.jsonl
- Update .planfile/sprints/current.yaml
- Update .planfile/sprints/current.yaml.fast.json
- Update uv.lock
- Update wup.yaml

## [0.5.173] - 2026-07-06

### Docs
- Update CHANGELOG.md
- Update README.md

### Test
- Update tests/test_smells_data_clumps.py

### Other
- Update code2llm/analysis/smells.py

## [0.5.172] - 2026-07-06

### Docs
- Update CHANGELOG.md
- Update README.md

### Test
- Update tests/test_smells_shotgun_surgery.py

### Other
- Update code2llm/analysis/smells.py
- Update uv.lock

## [0.5.170] - 2026-07-05

### Fixed

- `_SKIP_DIR_NAMES` blanket-excluded any directory named exactly `lib`, `lib64`, `include`,
  `bin`, or `share` from analysis, regardless of location. These are common legitimate source
  directory names (Ruby gems keep all source in `lib/`, PlatformIO/Arduino firmware projects
  keep custom libraries in `lib/`, C/C++ projects keep headers in `include/`, Node packages
  ship CLI entrypoints in `bin/`), so real code was silently dropped from the analysis. The
  entries were also redundant: virtualenv directories are already fully pruned via the
  `venv`/`.venv`/`env`/`.env` entries, and `site-packages` remains excluded directly.

## [Unreleased]

### Performance

- Cache `is_excluded_path()` and `is_excluded()` with `@lru_cache` + set intersection (29k calls: 0.53s → ~0s)
- Cache `_rel_path()` / `rel_path()` with `@lru_cache` to avoid repeated `Path.resolve()` / `lstat` syscalls
- Replace `scan_file_sizes()` rglob+read_text with fast path from `AnalysisResult.modules` (1.07s → 0.006s)
- Fix O(n²) `is_entry_point` in flow_compact.py — pre-compute called_funcs set (6.8M iterations → O(n))
- Fix O(n×m) mutations scan in `SmellDetector._detect_god_functions` and `_detect_feature_envy` — pre-index by scope
- Reduce betweenness centrality sampling for large graphs (k=200 cap, 10% for >2k nodes)
- Cache `file_line_count()` in MAP exporter
- Mermaid flow.mmd: 1.12s → 0.05s (22×), TOON: 0.45s → 0.12s, Evolution: 0.55s → 0.007s
- Cold start total: 5.5s → 2.1s, --fast mode: 1.7s

### Code Quality

- Remove ~85 unused imports across 40+ files (analysis, core, exporters, generators, nlp, patterns, refactor)
- Fix Mermaid comment syntax: `.mmd` files use `%%` for comments, not `#`
- Fix Chromium sandbox crash: pass `--no-sandbox` to puppeteer/mmdc for PNG generation

## [0.5.171] - 2026-07-05

### Docs
- Update CHANGELOG.md
- Update README.md

### Other
- Update VERSION
- Update code2llm/__init__.py
- Update code2llm/core/file_filter.py
- Update examples/docker-doql-example/rust/local.dev.txt
- Update local.dev.txt

## [0.5.169] - 2026-06-29

### Docs
- Update README.md

## [0.5.168] - 2026-05-26

### Docs
- Update README.md

## [0.5.167] - 2026-05-25

### Docs
- Update CHANGELOG.md
- Update README.md

### Other
- Update .koru/project.json
- Update VERSION
- Update code2llm/__init__.py
- Update code2llm/nlp/__init__.py

## [0.5.166] - 2026-05-25

### Docs
- Update README.md

## [0.5.165] - 2026-05-25

### Docs
- Update README.md

## [0.5.164] - 2026-05-25

### Docs
- Update README.md
- Update context.md
- Update project/README.md
- Update project/context.md

### Other
- Update .koru/event-store.jsonl
- Update .koru/project.json
- Update .planfile/.koru/event-store.jsonl
- Update analysis.toon.yaml
- Update batch_1/analysis.toon.yaml
- Update code2llm/analysis.toon.yaml
- Update code2llm_part2/analysis.toon.yaml
- Update evolution.toon.yaml
- Update map.toon.yaml
- Update project/analysis.toon.yaml
- ... and 8 more files

## [0.5.163] - 2026-05-25

### Docs
- Update README.md

### Other
- Update code2llm/core/streaming_analyzer.py

## [0.5.162] - 2026-05-25

### Docs
- Update README.md

### Other
- Update code2llm/analysis/pipeline_detector.py
- Update code2llm/core/lang/ts_parser.py
- Update code2llm/exporters/map/yaml_export.py
- Update code2llm/refactor/prompt_engine.py

## [0.5.161] - 2026-05-25

### Docs
- Update README.md
- Update context.md
- Update project/README.md
- Update project/context.md

### Other
- Update analysis.toon.yaml
- Update batch_1/analysis.toon.yaml
- Update code2llm/analysis.toon.yaml
- Update code2llm/cli_exports/formats.py
- Update code2llm/core/analyzer.py
- Update code2llm/exporters/context_exporter.py
- Update code2llm/exporters/dashboard_data.py
- Update code2llm/exporters/planfile_tickets.py
- Update code2llm/exporters/toon_view.py
- Update code2llm_part2/analysis.toon.yaml
- ... and 11 more files

## [0.5.160] - 2026-05-25

### Docs
- Update README.md

## [0.5.159] - 2026-05-25

### Docs
- Update README.md
- Update docs/README.md

### Other
- Update project/duplication.toon.yaml

## [0.5.158] - 2026-05-25

### Docs
- Update README.md
- Update project/README.md
- Update project/context.md

### Other
- Update project/analysis.toon.yaml
- Update project/calls.mmd
- Update project/calls.png
- Update project/calls.toon.yaml
- Update project/calls.yaml
- Update project/compact_flow.mmd
- Update project/compact_flow.png
- Update project/evolution.toon.yaml
- Update project/flow.mmd
- Update project/flow.png
- ... and 6 more files

## [0.5.157] - 2026-05-25

### Docs
- Update README.md

## [0.5.156] - 2026-05-25

### Docs
- Update README.md
- Update project/README.md
- Update project/context.md

### Other
- Update .gitignore
- Update .koru/event-store.jsonl
- Update .koru/project.json
- Update .planfile/.koru/autonomous-state.json
- Update .planfile/.koru/autonomy-telemetry.json
- Update .planfile/.koru/event-store.jsonl
- Update .planfile/config.yaml
- Update .planfile/sprints/current.yaml
- Update deps.json
- Update project/analysis.toon.yaml
- ... and 7 more files

## [0.5.155] - 2026-05-24

### Docs
- Update README.md

### Other
- Update .koru/event-store.jsonl
- Update .koru/project.json
- Update .planfile/.koru/autonomous-state.json
- Update .planfile/.koru/autonomy-telemetry.json
- Update .planfile/.koru/event-store.jsonl
- Update .planfile/.koru/operator-steps/mcp_koru.ticket
- Update .planfile/sprints/current.yaml

## [0.5.154] - 2026-05-24

### Docs
- Update README.md

### Other
- Update .koru/event-store.jsonl
- Update .koru/history.jsonl
- Update .koru/onboarding.json
- Update .koru/project.json
- Update .planfile/.koru/autonomous-state.json
- Update .planfile/.koru/autonomy-telemetry.json
- Update .planfile/.koru/event-store.jsonl
- Update .planfile/.koru/nfo-events.jsonl
- Update .planfile/.koru/operator-steps/mcp_koru.ticket
- Update .planfile/.koru/queue-runner.lock
- ... and 10 more files

## [0.5.153] - 2026-05-24

### Docs
- Update README.md
- Update docs/README.md
- Update project/README.md
- Update project/context.md

### Test
- Update tests/test_planfile_tickets_exporter.py

### Other
- Update code2llm/cli_exports/orchestrator.py
- Update code2llm/cli_exports/orchestrator_constants.py
- Update code2llm/cli_parser.py
- Update code2llm/exporters/__init__.py
- Update code2llm/exporters/planfile_tickets.py
- Update code2llm/exporters/toon/helpers.py
- Update project/analysis.toon.yaml
- Update project/calls.mmd
- Update project/calls.png
- Update project/calls.toon.yaml
- ... and 12 more files

## [0.5.152] - 2026-05-06

### Docs
- Update README.md

### Test
- Update tests/test_declarative_collection.py
- Update tests/test_export_cache_flags.py

### Other
- Update code2llm/cli_exports/orchestrator.py
- Update code2llm/core/config.py
- Update code2llm/core/file_analyzer.py
- Update code2llm/core/file_filter.py
- Update code2llm/core/gitignore.py
- Update code2llm/core/lang/generic.py
- Update code2llm/core/models.py
- Update code2llm/core/repo_files.py
- Update code2llm/core/source_classifier.py
- Update code2llm/core/streaming/scanner.py

## [0.5.151] - 2026-05-06

### Docs
- Update README.md
- Update docs/README.md
- Update project/context.md

### Other
- Update code2llm/core/config.py
- Update project/analysis.toon.yaml
- Update project/calls.mmd
- Update project/calls.png
- Update project/calls.toon.yaml
- Update project/calls.yaml
- Update project/compact_flow.mmd
- Update project/compact_flow.png
- Update project/duplication.toon.yaml
- Update project/evolution.toon.yaml
- ... and 7 more files

## [0.5.150] - 2026-05-06

### Docs
- Update README.md
- Update docs/README.md
- Update project/context.md

### Other
- Update project/analysis.toon.yaml
- Update project/calls.mmd
- Update project/calls.toon.yaml
- Update project/calls.yaml
- Update project/compact_flow.mmd
- Update project/duplication.toon.yaml
- Update project/evolution.toon.yaml
- Update project/flow.mmd
- Update project/index.html
- Update project/map.toon.yaml
- ... and 3 more files

## [0.5.149] - 2026-05-06

### Docs
- Update CHANGELOG.md
- Update README.md
- Update docs/README.md
- Update project/README.md
- Update project/context.md

### Other
- Update code2llm/analysis/call_graph.py
- Update code2llm/analysis/cfg.py
- Update code2llm/analysis/data_analysis.py
- Update code2llm/analysis/dfg.py
- Update code2llm/analysis/side_effects.py
- Update code2llm/analysis/smells.py
- Update code2llm/cli_analysis.py
- Update code2llm/cli_exports/formats.py
- Update code2llm/cli_exports/orchestrator.py
- Update code2llm/cli_exports/orchestrator_handlers.py
- ... and 52 more files

## [0.5.148] - 2026-05-06

### Docs
- Update CHANGELOG.md
- Update README.md
- Update docs/README.md
- Update project/README.md
- Update project/context.md

### Other
- Update code2llm/analysis/smells.py
- Update code2llm/core/refactoring.py
- Update code2llm/exporters/map/utils.py
- Update code2llm/exporters/mermaid/flow_compact.py
- Update project/analysis.toon.yaml
- Update project/calls.mmd
- Update project/calls.toon.yaml
- Update project/calls.yaml
- Update project/compact_flow.mmd
- Update project/evolution.toon.yaml
- ... and 6 more files

## [0.5.147] - 2026-05-06

### Docs
- Update CHANGELOG.md
- Update README.md
- Update SUMD.md
- Update SUMR.md
- Update TODO.md
- Update context.md
- Update docs/README.md
- Update project/README.md
- Update project/context.md

### Test
- Update testql-scenarios/generated-api-smoke.testql.toon.yaml
- Update testql-scenarios/generated-cli-tests.testql.toon.yaml
- Update testql-scenarios/generated-from-pytests.testql.toon.yaml

### Other
- Update analysis.toon.yaml
- Update app.doql.less
- Update batch_1/analysis.toon.yaml
- Update code2llm/analysis.toon.yaml
- Update code2llm/exporters/evolution/computation.py
- Update code2llm/exporters/evolution/exclusion.py
- Update code2llm/exporters/flow_constants.py
- Update code2llm/exporters/toon/helpers.py
- Update code2llm_part2/analysis.toon.yaml
- Update evolution.toon.yaml
- ... and 23 more files

## [0.1.10] - 2026-05-06

### Fixed
- Fix smart-return-type issues (ticket-73e5bbd1)
- Fix string-concat issues (ticket-a30af65b)
- Fix magic-numbers issues (ticket-ef8ee957)
- Fix ai-boilerplate issues (ticket-b1c1fe3e)
- Fix magic-numbers issues (ticket-52367c3a)
- Fix ai-boilerplate issues (ticket-2121a32a)
- Fix smart-return-type issues (ticket-4fd3d190)
- Fix string-concat issues (ticket-d93c9bdd)
- Fix unused-imports issues (ticket-38e59906)
- Fix magic-numbers issues (ticket-af6405f4)
- Fix ai-boilerplate issues (ticket-ddd13296)
- Fix smart-return-type issues (ticket-b80757e7)
- Fix unused-imports issues (ticket-202d235c)
- Fix magic-numbers issues (ticket-8717b97d)
- Fix ai-boilerplate issues (ticket-1c98d3e9)
- Fix smart-return-type issues (ticket-7d1b05fa)
- Fix string-concat issues (ticket-750e0a23)
- Fix magic-numbers issues (ticket-1de3d821)
- Fix ai-boilerplate issues (ticket-0ee7874f)
- Fix relative-imports issues (ticket-4542c0eb)
- Fix string-concat issues (ticket-46bada34)
- Fix unused-imports issues (ticket-8f728eb9)
- Fix relative-imports issues (ticket-fb785f8f)
- Fix string-concat issues (ticket-b4b21ad2)
- Fix unused-imports issues (ticket-3dc29315)
- Fix magic-numbers issues (ticket-ce7e4364)
- Fix relative-imports issues (ticket-2e1e68bb)
- Fix relative-imports issues (ticket-5e5cb929)
- Fix ai-boilerplate issues (ticket-9fef9348)
- Fix smart-return-type issues (ticket-078417e9)
- Fix unused-imports issues (ticket-2d449422)
- Fix ai-boilerplate issues (ticket-3cf43ff0)
- Fix smart-return-type issues (ticket-b109becf)
- Fix string-concat issues (ticket-ebade34d)
- Fix unused-imports issues (ticket-2c248882)
- Fix magic-numbers issues (ticket-57f0006d)
- Fix smart-return-type issues (ticket-0baa98af)
- Fix unused-imports issues (ticket-ac7d302d)
- Fix string-concat issues (ticket-3d395be4)
- Fix unused-imports issues (ticket-29284904)
- Fix magic-numbers issues (ticket-10343717)
- Fix smart-return-type issues (ticket-e784b0d2)
- Fix unused-imports issues (ticket-54fbed7c)
- Fix string-concat issues (ticket-db8ae93d)
- Fix relative-imports issues (ticket-50e335ed)
- Fix string-concat issues (ticket-2442e793)
- Fix magic-numbers issues (ticket-880b1b30)
- Fix llm-generated-code issues (ticket-54804a5f)
- Fix relative-imports issues (ticket-70734be8)
- Fix unused-imports issues (ticket-00df05a4)
- Fix string-concat issues (ticket-8a5bf302)
- Fix unused-imports issues (ticket-3c00583d)
- Fix magic-numbers issues (ticket-dbdd1f64)
- Fix llm-generated-code issues (ticket-6e63000b)
- Fix relative-imports issues (ticket-5538ba0c)
- Fix llm-generated-code issues (ticket-fcc8677b)
- Fix relative-imports issues (ticket-f29f8dd5)
- Fix smart-return-type issues (ticket-3e0fb280)
- Fix unused-imports issues (ticket-e5e7b7ed)
- Fix ai-boilerplate issues (ticket-af4159b2)
- Fix llm-generated-code issues (ticket-9182adcc)
- Fix relative-imports issues (ticket-22d320b7)
- Fix smart-return-type issues (ticket-16b1d14e)
- Fix string-concat issues (ticket-f9bc9ca6)
- Fix unused-imports issues (ticket-d3dfd876)
- Fix relative-imports issues (ticket-51df42b3)
- Fix relative-imports issues (ticket-f36da736)
- Fix smart-return-type issues (ticket-80857266)
- Fix magic-numbers issues (ticket-81a26ffa)
- Fix relative-imports issues (ticket-f45674cb)
- Fix relative-imports issues (ticket-0cf43c37)
- Fix unused-imports issues (ticket-d65644cf)
- Fix magic-numbers issues (ticket-932d179a)
- Fix relative-imports issues (ticket-c5ee3839)
- Fix string-concat issues (ticket-a683e15c)
- Fix relative-imports issues (ticket-983158c5)
- Fix unused-imports issues (ticket-3aec83fa)
- Fix relative-imports issues (ticket-8ecae85a)
- Fix magic-numbers issues (ticket-71438ebb)
- Fix relative-imports issues (ticket-0323daf6)
- Fix string-concat issues (ticket-a2dd7cf4)
- Fix unused-imports issues (ticket-b1252687)
- Fix relative-imports issues (ticket-d0802da3)
- Fix unused-imports issues (ticket-add932e6)
- Fix relative-imports issues (ticket-012a9053)
- Fix string-concat issues (ticket-05a0c948)
- Fix unused-imports issues (ticket-660b3f81)
- Fix string-concat issues (ticket-572a8474)
- Fix unused-imports issues (ticket-2ba99c51)
- Fix string-concat issues (ticket-1feac4b5)
- Fix magic-numbers issues (ticket-e7d0dbd3)
- Fix llm-generated-code issues (ticket-f73bcd11)
- Fix relative-imports issues (ticket-3ad1319d)
- Fix relative-imports issues (ticket-14671464)
- Fix string-concat issues (ticket-612747fd)
- Fix magic-numbers issues (ticket-9b444394)
- Fix relative-imports issues (ticket-1fb1a093)
- Fix duplicate-imports issues (ticket-30bcfb99)
- Fix string-concat issues (ticket-c55b872a)
- Fix unused-imports issues (ticket-d029aee4)

### Performance

- perf(core): add `--fast` CLI flag — skips vulture, centrality, DFG, communities for 3-10x speedup
- perf(core): guard `_perform_deep_analysis` with `skip_data_flow` — avoid DFG/CG extraction when not needed
- perf(core): fix duplicate call extraction (ast.walk + CallGraphExtractor were doubling entries)
- perf(core): raise parallel threshold to 30 files — sequential is faster for small/medium projects
- perf(core): make refactoring analysis conditional (`skip_refactoring_analysis`, `skip_dead_code_detection`, `skip_centrality`, `skip_community_detection`)
- perf(config): add `PerformanceConfig.apply_fast_mode()` to set all skip flags at once
- perf(cli): strategy `quick` now auto-enables all performance skip flags
- perf(toon): replace O(n²) suffix matching in fan-in/coupling with O(1) dict index (`metrics_core.py`)
- perf(toon): replace 73× rglob `_scan_line_counts` (13s) with single-pass from AnalysisResult modules (<0.1s)

### Features

- feat(code2llm): configuration management system
- feat(code2llm): deep code analysis engine
- feat(config): changelog generation
- feat(goal): CLI interface improvements

### Fixes

- fix(docs): add markdown output and commit messages
- fix(todo): move 105 completed prefact items from TODO.md to Done section

### Refactoring

- refactor(config): multi-language support with 4 supporting modules
- refactor(docs): code analysis engine
- refactor(goal): output formatting

## [0.5.146] - 2026-05-06

### Docs
- Update CHANGELOG.md
- Update README.md
- Update project/README.md
- Update project/context.md

### Other
- Update code2llm/cli_exports/formats.py
- Update code2llm/cli_exports/orchestrator.py
- Update code2llm/cli_exports/orchestrator_handlers.py
- Update code2llm/cli_exports/prompt.py
- Update code2llm/exporters/project_yaml/core.py
- Update code2llm/exporters/toon/helpers.py
- Update code2llm/exporters/toon/metrics.py
- Update code2llm/exporters/toon/metrics_core.py
- Update project/analysis.toon.yaml
- Update project/batch_1/analysis.toon.yaml
- ... and 5 more files

## [0.5.145] - 2026-05-06

### Docs
- Update CHANGELOG.md
- Update README.md
- Update SUMD.md
- Update TODO.md
- Update context.md
- Update docs/COMPARISON_AND_OPTIMIZATION.md
- Update docs/METHODOLOGY.md
- Update docs/README.md
- Update project/README.md
- Update project/context.md

### Test
- Update tests/test_deep_analysis.py

### Other
- Update .gitignore
- Update SUMR.json
- Update analysis.toon.yaml
- Update app.doql.less
- Update batch_1/analysis.toon.yaml
- Update code2llm/analysis.toon.yaml
- Update code2llm/cli_analysis.py
- Update code2llm/cli_parser.py
- Update code2llm/core/__init__.py
- Update code2llm/core/analyzer.py
- ... and 34 more files

## [0.5.144] - 2026-04-25

### Docs
- Update README.md
- Update context.md

### Other
- Update batch_1/analysis.toon.yaml
- Update code2llm/analysis.toon.yaml
- Update code2llm_part2/analysis.toon.yaml
- Update project/batch_1/analysis.toon.yaml
- Update project/code2llm/analysis.toon.yaml
- Update project/root/analysis.toon.yaml
- Update project2.sh
- Update root/analysis.toon.yaml

## [0.5.143] - 2026-04-21

### Docs
- Update README.md
- Update context.md
- Update docs/README.md
- Update examples/docker-doql-example/DEPENDENCY_ANALYSIS.md
- Update project/README.md
- Update project/context.md

### Test
- Update tests/test_cache_invalidation_e2e.py
- Update tests/test_declarative_collection.py
- Update tests/test_file_analyzer_tagging.py
- Update tests/test_persistent_cache.py

### Other
- Update analysis.toon.yaml
- Update batch_1/analysis.toon.yaml
- Update code2llm/analysis.toon.yaml
- Update code2llm/core/analyzer.py
- Update code2llm/core/config.py
- Update code2llm/core/file_analyzer.py
- Update code2llm/core/persistent_cache.py
- Update code2llm_part2/analysis.toon.yaml
- Update evolution.toon.yaml
- Update project/analysis.toon.yaml
- ... and 22 more files

## [0.5.142] - 2026-04-21

### Docs
- Update SUMD.md
- Update SUMR.md
- Update examples/docker-doql-example/ANALYSIS.md
- Update examples/docker-doql-example/SUMMARY.md

### Other
- Update examples/docker-doql-example/app.doql.less
- Update examples/docker-doql-example/app/main.py
- Update examples/docker-doql-example/docker-compose.yml
- Update examples/docker-doql-example/fluent-bit.conf
- Update examples/docker-doql-example/go/main.go
- Update examples/docker-doql-example/java/Main.java
- Update examples/docker-doql-example/node/index.js
- Update examples/docker-doql-example/php/index.php
- Update examples/docker-doql-example/prometheus.yml
- Update examples/docker-doql-example/ruby/app.rb
- ... and 8 more files

## [0.5.141] - 2026-04-21

### Docs
- Update docs/README.md
- Update project/README.md
- Update project/batch_1/context.md
- Update project/context.md
- Update project/root/context.md
- Update project/test_python_only_examples/context.md

### Test
- Update tests/test_orchestrator_cache_mtime.py

### Other
- Update code2llm/cli_exports/orchestrator.py
- Update project/analysis.toon.yaml
- Update project/batch_1/analysis.toon.yaml
- Update project/batch_1/evolution.toon.yaml
- Update project/calls.mmd
- Update project/calls.png
- Update project/calls.toon.yaml
- Update project/calls.yaml
- Update project/compact_flow.mmd
- Update project/compact_flow.png
- ... and 18 more files

## [0.5.140] - 2026-04-21

### Docs
- Update project/README.md
- Update project/batch_1/context.md
- Update project/context.md
- Update project/root/context.md
- Update project/test_python_only_examples/context.md

### Other
- Update project/analysis.toon.yaml
- Update project/batch_1/analysis.toon.yaml
- Update project/batch_1/evolution.toon.yaml
- Update project/calls.mmd
- Update project/calls.png
- Update project/calls.toon.yaml
- Update project/calls.yaml
- Update project/code2llm/analysis.toon.yaml
- Update project/code2llm_part2/analysis.toon.yaml
- Update project/compact_flow.mmd
- ... and 18 more files

## [0.5.139] - 2026-04-20

### Other
- Update code2llm/cli_exports/orchestrator_chunked.py

## [0.5.138] - 2026-04-20

### Docs
- Update README.md
- Update SUMD.md

### Other
- Update app.doql.less
- Update project/map.toon.yaml
- Update sumd.json

## [0.5.137] - 2026-04-20

### Docs
- Update README.md

## [0.5.136] - 2026-04-20

### Docs
- Update README.md
- Update SUMD.md
- Update SUMR.md
- Update context.md
- Update docs/README.md
- Update project/README.md
- Update project/context.md

### Other
- Update analysis.toon.yaml
- Update app.doql.css
- Update batch_1/analysis.toon.yaml
- Update code2llm/analysis.toon.yaml
- Update code2llm_part2/analysis.toon.yaml
- Update evolution.toon.yaml
- Update orchestrator.sh
- Update pipeline.py
- Update project.sh
- Update project/analysis.toon.yaml
- ... and 23 more files

## [0.5.135] - 2026-04-20

### Other
- Update code2llm/exporters/mermaid/calls.py
- Update code2llm/exporters/mermaid/classic.py
- Update code2llm/exporters/mermaid/compact.py
- Update code2llm/exporters/mermaid/flow_compact.py
- Update code2llm/exporters/mermaid/flow_detailed.py
- Update code2llm/exporters/mermaid/flow_full.py
- Update code2llm/exporters/mermaid/utils.py
- Update code2llm/exporters/mermaid_flow_helpers.py
- Update code2llm/exporters/yaml_exporter.py

## [0.5.134] - 2026-04-20

### Docs
- Update README.md
- Update redsl_refactor_plan.md
- Update redsl_refactor_report.md

### Other
- Update .gitignore
- Update .pyqual/llx_history.jsonl
- Update .pyqual/pipeline.db
- Update .pyqual/ruff.json
- Update .pyqual/runtime_errors.json
- Update code2llm/exporters/mermaid_exporter.py
- Update code2llm/exporters/yaml_exporter.py
- Update code2llm/generators/mermaid.py
- Update planfile.yaml
- Update project/validation.toon.yaml
- ... and 3 more files

## [0.5.133] - 2026-04-20

### Other
- Update code2llm/core/analyzer.py
- Update code2llm/core/file_filter.py
- Update code2llm/core/gitignore.py

## [0.5.132] - 2026-04-20

### Other
- Update code2llm/core/analyzer.py
- Update planfile.yaml

## [0.5.131] - 2026-04-20

### Other
- Update code2llm/core/analyzer.py

## [0.5.130] - 2026-04-20

### Other
- Update code2llm/core/file_filter.py

## [0.5.129] - 2026-04-20

### Docs
- Update redsl_refactor_report.md

### Other
- Update code2llm/cli_commands.py
- Update code2llm/core/analyzer.py
- Update code2llm/core/gitignore.py
- Update redsl_refactor_report.toon.yaml

## [0.5.128] - 2026-04-19

### Docs
- Update redsl_refactor_plan.md
- Update redsl_refactor_report.md

### Other
- Update code2llm/cli_exports/orchestrator.py
- Update code2llm/core/file_filter.py
- Update code2llm/exporters/flow_constants.py
- Update planfile.yaml
- Update redsl_refactor_plan.toon.yaml
- Update redsl_refactor_report.toon.yaml

## [0.5.127] - 2026-04-19

### Other
- Update code2llm/exporters/evolution/__init__.py
- Update code2llm/exporters/evolution/computation.py
- Update code2llm/exporters/evolution/constants.py
- Update code2llm/exporters/evolution/exclusion.py
- Update code2llm/exporters/evolution/render.py
- Update code2llm/exporters/evolution/yaml_export.py
- Update code2llm/exporters/evolution_exporter.py

## [0.5.126] - 2026-04-19

### Other
- Update code2llm/cli_exports/__init__.py
- Update code2llm/cli_exports/orchestrator.py
- Update code2llm/cli_exports/orchestrator_chunked.py
- Update code2llm/cli_exports/orchestrator_constants.py
- Update code2llm/cli_exports/orchestrator_handlers.py
- Update code2llm/exporters/map/__init__.py
- Update code2llm/exporters/map/alerts.py
- Update code2llm/exporters/map/details.py
- Update code2llm/exporters/map/header.py
- Update code2llm/exporters/map/module_list.py
- ... and 31 more files

## [0.5.125] - 2026-04-19

## [0.5.124] - 2026-04-19

### Docs
- Update docs/README.md
- Update project/README.md
- Update project/context.md

### Other
- Update code2llm/cli_analysis.py
- Update code2llm/cli_exports/orchestrator.py
- Update code2llm/core/analyzer.py
- Update code2llm/exporters/report_generators.py
- Update code2llm/generators/llm_flow.py
- Update code2llm/generators/llm_task.py
- Update demo_langs/valid/sample.py
- Update examples/functional_refactoring/__init__.py
- Update examples/functional_refactoring/cache.py
- Update examples/functional_refactoring/cli.py
- ... and 12 more files

## [0.5.123] - 2026-04-19

### Other
- Update code2llm/cli_commands.py
- Update code2llm/cli_parser.py
- Update code2llm/core/config.py
- Update code2llm/core/lang/base.py
- Update code2llm/generators/mermaid.py

## [0.5.122] - 2026-04-19

### Docs
- Update docs/README.md
- Update project/README.md
- Update project/context.md

### Other
- Update code2llm/cli_exports/orchestrator.py
- Update code2llm/core/analyzer.py
- Update code2llm/core/config.py
- Update code2llm/core/file_analyzer.py
- Update code2llm/core/gitignore.py
- Update code2llm/core/lang/__init__.py
- Update code2llm/core/models.py
- Update code2llm/core/refactoring.py
- Update code2llm/generators/mermaid.py
- Update project/analysis.toon.yaml
- ... and 7 more files

## [0.5.121] - 2026-04-19

### Docs
- Update SUMD.md
- Update SUMR.md

### Other
- Update SUMR.json
- Update code2llm/analysis/__init__.py
- Update code2llm/analysis/call_graph.py
- Update code2llm/analysis/cfg.py
- Update code2llm/analysis/data_analysis.py
- Update code2llm/analysis/pipeline_classifier.py
- Update code2llm/analysis/pipeline_detector.py
- Update code2llm/analysis/pipeline_resolver.py
- Update code2llm/exporters/dashboard_data.py
- Update code2llm/exporters/dashboard_renderer.py
- ... and 11 more files

## [0.5.120] - 2026-04-19

## [0.5.119] - 2026-04-19

### Other
- Update code2llm/exporters/index_generator.py
- Update code2llm/exporters/index_generator/__init__.py
- Update code2llm/exporters/index_generator/renderer.py
- Update code2llm/exporters/index_generator/scanner.py

## [0.5.118] - 2026-04-19

### Docs
- Update docs/README.md
- Update project/README.md

### Other
- Update code2llm/analysis/call_graph.py
- Update code2llm/analysis/cfg.py
- Update code2llm/analysis/data_analysis.py
- Update code2llm/analysis/utils/__init__.py
- Update code2llm/analysis/utils/ast_helpers.py
- Update code2llm/core/file_cache.py
- Update code2llm/core/streaming/cache.py
- Update code2llm/exporters/article_view.py
- Update code2llm/exporters/base.py
- Update code2llm/exporters/context_view.py
- ... and 18 more files

## [0.5.117] - 2026-04-19

### Other
- Update code2llm/cli_exports/formats.py
- Update code2llm/core/lang/__init__.py
- Update validate_toon.py

## [0.5.116] - 2026-04-19

### Docs
- Update project/context.md

### Other
- Update code2llm/analysis/call_graph.py
- Update code2llm/analysis/cfg.py
- Update code2llm/analysis/dfg.py
- Update code2llm/analysis/utils/__init__.py
- Update code2llm/core/lang/__init__.py
- Update code2llm/core/lang/ruby.py
- Update project/analysis.toon.yaml
- Update project/calls.mmd
- Update project/compact_flow.mmd
- Update project/flow.mmd
- ... and 1 more files

## [0.5.115] - 2026-04-19

### Docs
- Update README.md
- Update SUMD.md
- Update SUMR.md
- Update context.md
- Update docs/README.md
- Update project/README.md
- Update project/batch_1/context.md
- Update project/context.md
- Update project/root/context.md
- Update project/test_python_only_examples/context.md
- ... and 1 more files

### Test
- Update test_langs/valid/sample.py
- Update test_python_only_examples_tests/analysis.toon.yaml
- Update tests/test_persistent_cache.py
- Update tests/test_project_toon_export.py

### Other
- Update Taskfile.yml
- Update analysis.toon
- Update analysis.toon.yaml
- Update batch_1/analysis.toon.yaml
- Update code2llm/analysis/utils/ast_helpers.py
- Update code2llm/cli_analysis.py
- Update code2llm/cli_commands.py
- Update code2llm/cli_exports/orchestrator.py
- Update code2llm/cli_parser.py
- Update code2llm/core/analyzer.py
- ... and 49 more files

## [0.5.114] - 2026-04-18

## [0.5.113] - 2026-04-18

### Docs
- Update project/README.md

### Test
- Update tests/test_calls_toon_export.py

### Other
- Update calls.yaml
- Update project/calls.toon.yaml
- Update project/index.html

## [0.5.112] - 2026-04-18

### Docs
- Update README.md
- Update context.md
- Update project/README.md
- Update project/context.md

### Test
- Update tests/test_project_toon_export.py
- Update tests/test_prompt_txt.py

### Other
- Update analysis.toon.yaml
- Update calls.mmd
- Update calls.yaml
- Update code2llm/cli_exports/formats.py
- Update code2llm/exporters/project_yaml/__init__.py
- Update code2llm/exporters/project_yaml/constants.py
- Update code2llm/exporters/project_yaml/core.py
- Update code2llm/exporters/project_yaml/evolution.py
- Update code2llm/exporters/project_yaml/health.py
- Update code2llm/exporters/project_yaml/hotspots.py
- ... and 7 more files

## [0.5.111] - 2026-04-18

### Docs
- Update project/README.md
- Update project/context.md

### Other
- Update code2llm/cli_exports/formats.py
- Update code2llm/exporters/yaml_exporter.py
- Update project/analysis.toon.yaml
- Update project/calls.yaml
- Update project/index.html

## [0.5.110] - 2026-04-18

### Other
- Update validate_toon.py

## [0.5.109] - 2026-04-18

### Docs
- Update calls_output/README.md
- Update calls_output/context.md
- Update project_calls_test/README.md
- Update project_calls_test/context.md

### Test
- Update tests/test_edge_cases.py

### Other
- Update calls_output/analysis.toon.yaml
- Update calls_output/calls.yaml
- Update calls_output/index.html
- Update code2llm/exporters/yaml_exporter.py
- Update project_calls_test/calls.yaml
- Update project_calls_test/index.html

## [0.5.108] - 2026-04-18

### Test
- Update test_calls_output/README.md
- Update test_calls_output/analysis.toon.yaml
- Update test_calls_output/context.md
- Update test_calls_output/index.html

### Other
- Update code2llm/cli_exports/orchestrator.py
- Update code2llm/exporters/yaml_exporter.py

## [0.5.107] - 2026-04-18

### Docs
- Update README.md
- Update docs/README.md

### Test
- Update test_calls_output/README.md
- Update test_calls_output/analysis.toon.yaml
- Update test_calls_output/context.md
- Update test_calls_output/index.html

## [0.5.106] - 2026-04-18

### Test
- Update tests/test_prompt_engine.py

### Other
- Update code2llm/cli_parser.py

## [0.5.105] - 2026-04-18

### Docs
- Update CHANGELOG.md
- Update README.md
- Update REFACTORING_PLAN.md
- Update ROADMAP.md
- Update TODO.md
- Update code2llm/templates/extract_method.md
- Update code2llm/templates/move_method.md
- Update context.md
- Update docs/API.md
- Update docs/COMPARISON_AND_OPTIMIZATION.md
- ... and 13 more files

### Test
- Update test_dynamic/README.md
- Update test_dynamic/batch_1/context.md
- Update test_dynamic/context.md
- Update test_dynamic/root/context.md
- Update test_dynamic2/README.md
- Update test_dynamic2/batch_1/context.md
- Update test_dynamic2/context.md
- Update test_dynamic2/root/context.md
- Update test_metrics/README.md
- Update test_metrics/batch_1/context.md
- ... and 6 more files

### Other
- Update Taskfile.yml
- Update analysis.toon.yaml
- Update app.doql.css
- Update batch_1/analysis.toon.yaml
- Update code2llm/cli_exports/formats.py
- Update code2llm/cli_exports/orchestrator.py
- Update code2llm/cli_parser.py
- Update code2llm/exporters/yaml_exporter.py
- Update project/analysis.toon.yaml
- Update project/batch_1/analysis.toon.yaml
- ... and 2 more files

### Docs
- Update README.md
- Update context.md
- Update project/context.md

### Other
- Update analysis.toon.yaml
- Update batch_1/analysis.toon.yaml
- Update code2llm/cli_commands.py
- Update code2llm/core/refactoring.py
- Update project.sh
- Update project/analysis.toon.yaml
- Update project/batch_1/analysis.toon.yaml
- Update project/root/analysis.toon.yaml
- Update root/analysis.toon.yaml

### Docs
- Update README.md
- Update context.md
- Update project/README.md
- Update project/context.md

### Other
- Update analysis.toon.yaml
- Update batch_1/analysis.toon.yaml
- Update benchmarks/benchmark_optimizations.py
- Update code2llm/.code2llm_incremental.json
- Update code2llm/core/lang/base.py
- Update code2llm/core/lang/cpp.py
- Update code2llm/core/lang/csharp.py
- Update code2llm/core/lang/go_lang.py
- Update code2llm/core/lang/java.py
- Update code2llm/core/lang/ts_extractors.py
- ... and 5 more files

### Other
- Update code2llm/core/export_pipeline.py
- Update code2llm/core/incremental.py
- Update code2llm/core/lang/base.py
- Update code2llm/core/lang/csharp.py
- Update code2llm/core/lang/java.py

### Docs
- Update CHANGELOG.md
- Update README.md
- Update TODO.md
- Update context.md
- Update docs/README.md
- Update project/README.md
- Update project/context.md

### Other
- Update .pyqual/pipeline.db
- Update .pyqual/ruff.json
- Update analysis.toon.yaml
- Update batch_1/analysis.toon.yaml
- Update code2llm/analysis/side_effects.py
- Update code2llm/analysis/type_inference.py
- Update code2llm/analysis/utils/__init__.py
- Update code2llm/analysis/utils/ast_helpers.py
- Update code2llm/cli_exports/formats.py
- Update code2llm/cli_exports/prompt.py
- ... and 30 more files

### Fixed
- Fix magic-numbers issues (ticket-5b969e46)

### Fixed
- Fix smart-return-type issues (ticket-73e5bbd1)
- Fix string-concat issues (ticket-a30af65b)
- Fix magic-numbers issues (ticket-ef8ee957)
- Fix ai-boilerplate issues (ticket-b1c1fe3e)
- Fix magic-numbers issues (ticket-52367c3a)
- Fix ai-boilerplate issues (ticket-2121a32a)
- Fix smart-return-type issues (ticket-b80757e7)
- Fix unused-imports issues (ticket-202d235c)
- Fix magic-numbers issues (ticket-8717b97d)
- Fix ai-boilerplate issues (ticket-1c98d3e9)
- Fix relative-imports issues (ticket-4542c0eb)
- Fix string-concat issues (ticket-46bada34)
- Fix unused-imports issues (ticket-8f728eb9)
- Fix smart-return-type issues (ticket-7d1b05fa)
- Fix string-concat issues (ticket-750e0a23)
- Fix magic-numbers issues (ticket-1de3d821)
- Fix ai-boilerplate issues (ticket-0ee7874f)
- Fix relative-imports issues (ticket-2e1e68bb)
- Fix relative-imports issues (ticket-5e5cb929)
- Fix ai-boilerplate issues (ticket-9fef9348)
- Fix relative-imports issues (ticket-fb785f8f)
- Fix string-concat issues (ticket-b4b21ad2)
- Fix unused-imports issues (ticket-3dc29315)
- Fix magic-numbers issues (ticket-ce7e4364)
- Fix smart-return-type issues (ticket-078417e9)
- Fix unused-imports issues (ticket-2d449422)
- Fix ai-boilerplate issues (ticket-3cf43ff0)
- Fix smart-return-type issues (ticket-b109becf)
- Fix string-concat issues (ticket-ebade34d)
- Fix unused-imports issues (ticket-2c248882)
- Fix magic-numbers issues (ticket-57f0006d)
- Fix smart-return-type issues (ticket-0baa98af)
- Fix unused-imports issues (ticket-ac7d302d)
- Fix duplicate-imports issues (ticket-bcbaf1fe)
- Fix string-concat issues (ticket-3d395be4)
- Fix unused-imports issues (ticket-29284904)
- Fix magic-numbers issues (ticket-10343717)
- Fix relative-imports issues (ticket-50e335ed)
- Fix string-concat issues (ticket-2442e793)
- Fix unused-imports issues (ticket-a74db05d)
- Fix magic-numbers issues (ticket-880b1b30)
- Fix llm-generated-code issues (ticket-54804a5f)
- Fix smart-return-type issues (ticket-e784b0d2)
- Fix unused-imports issues (ticket-54fbed7c)
- Fix unused-imports issues (ticket-00df05a4)
- Fix string-concat issues (ticket-8a5bf302)
- Fix unused-imports issues (ticket-3c00583d)
- Fix magic-numbers issues (ticket-dbdd1f64)
- Fix relative-imports issues (ticket-5538ba0c)
- Fix llm-generated-code issues (ticket-fcc8677b)
- Fix relative-imports issues (ticket-f29f8dd5)
- Fix smart-return-type issues (ticket-3e0fb280)
- Fix unused-imports issues (ticket-e5e7b7ed)
- Fix ai-boilerplate issues (ticket-af4159b2)
- Fix llm-generated-code issues (ticket-6e63000b)
- Fix relative-imports issues (ticket-22d320b7)
- Fix smart-return-type issues (ticket-16b1d14e)
- Fix string-concat issues (ticket-f9bc9ca6)
- Fix unused-imports issues (ticket-d3dfd876)
- Fix duplicate-imports issues (ticket-4908248f)
- Fix relative-imports issues (ticket-f36da736)
- Fix smart-return-type issues (ticket-80857266)
- Fix unused-imports issues (ticket-ba2067d0)
- Fix duplicate-imports issues (ticket-878b1a6f)
- Fix magic-numbers issues (ticket-81a26ffa)
- Fix relative-imports issues (ticket-51df42b3)
- Fix relative-imports issues (ticket-f45674cb)
- Fix relative-imports issues (ticket-0cf43c37)
- Fix string-concat issues (ticket-5ca18309)
- Fix string-concat issues (ticket-a2dd7cf4)
- Fix unused-imports issues (ticket-b1252687)
- Fix relative-imports issues (ticket-983158c5)
- Fix unused-imports issues (ticket-3aec83fa)
- Fix relative-imports issues (ticket-8ecae85a)
- Fix magic-numbers issues (ticket-71438ebb)
- Fix relative-imports issues (ticket-d0802da3)
- Fix unused-imports issues (ticket-add932e6)
- Fix relative-imports issues (ticket-1fb1a093)
- Fix duplicate-imports issues (ticket-30bcfb99)
- Fix string-concat issues (ticket-c55b872a)
- Fix unused-imports issues (ticket-d029aee4)
- Fix llm-generated-code issues (ticket-f519748a)
- Fix magic-numbers issues (ticket-e7d0dbd3)
- Fix relative-imports issues (ticket-14671464)
- Fix string-concat issues (ticket-612747fd)
- Fix unused-imports issues (ticket-4a0539c9)
- Fix duplicate-imports issues (ticket-0477ffea)
- Fix magic-numbers issues (ticket-9b444394)
- Fix relative-imports issues (ticket-3ad1319d)
- Fix relative-imports issues (ticket-33f6bcb7)
- Fix unused-imports issues (ticket-a3129967)
- Fix unused-imports issues (ticket-b1cef125)
- Fix relative-imports issues (ticket-af9f92f2)
- Fix string-concat issues (ticket-aff3cbee)
- Fix duplicate-imports issues (ticket-7fcfb82d)
- Fix magic-numbers issues (ticket-c4739d71)
- Fix llm-generated-code issues (ticket-4ff23560)
- Fix unused-imports issues (ticket-68201297)
- Fix unused-imports issues (ticket-768a416a)
- Fix unused-imports issues (ticket-f32252c0)
- Fix unused-imports issues (ticket-517d616d)
- Fix unused-imports issues (ticket-07140201)
- Fix string-concat issues (ticket-8796ce56)
- Fix unused-imports issues (ticket-5d4bcbbf)
- Fix magic-numbers issues (ticket-7dbf09e4)
- Fix unused-imports issues (ticket-77a0c271)
- Fix relative-imports issues (ticket-395c6574)
- Fix string-concat issues (ticket-63898929)
- Fix unused-imports issues (ticket-b98d2fd7)
- Fix duplicate-imports issues (ticket-01744870)
- Fix magic-numbers issues (ticket-d80d2955)
- Fix relative-imports issues (ticket-b69ce7c2)
- Fix string-concat issues (ticket-49c9e9a4)
- Fix magic-numbers issues (ticket-d302da6a)
- Fix unused-imports issues (ticket-a6efe0e2)
- Fix relative-imports issues (ticket-ab6c0b1e)
- Fix unused-imports issues (ticket-fa0980c5)
- Fix string-concat issues (ticket-da543752)
- Fix relative-imports issues (ticket-0e1a4191)
- Fix unused-imports issues (ticket-6d968305)
- Fix duplicate-imports issues (ticket-13109585)
- Fix magic-numbers issues (ticket-7119207d)
- Fix relative-imports issues (ticket-0e8ec0fc)
- Fix string-concat issues (ticket-620e11b8)
- Fix magic-numbers issues (ticket-d3c994ba)
- Fix unused-imports issues (ticket-116dc41c)
- Fix magic-numbers issues (ticket-b4d00ddd)
- Fix relative-imports issues (ticket-12d382c6)
- Fix magic-numbers issues (ticket-8a1dbbc5)
- Fix relative-imports issues (ticket-3087a42a)
- Fix relative-imports issues (ticket-5e986716)
- Fix duplicate-imports issues (ticket-69e943a0)
- Fix unused-imports issues (ticket-e1e2f0ea)
- Fix magic-numbers issues (ticket-ebc7c382)
- Fix string-concat issues (ticket-e62394c5)
- Fix magic-numbers issues (ticket-9bda2bf1)
- Fix string-concat issues (ticket-9a4a57cc)
- Fix string-concat issues (ticket-4569732e)
- Fix magic-numbers issues (ticket-21fd670d)
- Fix relative-imports issues (ticket-06e00d59)
- Fix string-concat issues (ticket-b8702a6a)
- Fix unused-imports issues (ticket-88cedad4)
- Fix magic-numbers issues (ticket-adb30dce)
- Fix relative-imports issues (ticket-7158e0d9)
- Fix string-concat issues (ticket-daa38cce)
- Fix unused-imports issues (ticket-a0faffcb)
- Fix magic-numbers issues (ticket-2d7bcda9)
- Fix relative-imports issues (ticket-1ed77b62)
- Fix string-concat issues (ticket-133490d4)
- Fix magic-numbers issues (ticket-e8427781)
- Fix smart-return-type issues (ticket-f571522b)
- Fix magic-numbers issues (ticket-95166ff6)
- Fix relative-imports issues (ticket-07281de7)
- Fix string-concat issues (ticket-377d22f9)
- Fix unused-imports issues (ticket-5fff3d8e)
- Fix magic-numbers issues (ticket-26db9253)
- Fix string-concat issues (ticket-aa50b7aa)
- Fix unused-imports issues (ticket-fc8d3695)
- Fix magic-numbers issues (ticket-eeecb2be)
- Fix relative-imports issues (ticket-0c20c09e)
- Fix relative-imports issues (ticket-081aa696)
- Fix relative-imports issues (ticket-a05419b1)
- Fix unused-imports issues (ticket-bed5ee0d)
- Fix relative-imports issues (ticket-82e82f22)
- Fix string-concat issues (ticket-7a04c806)
- Fix unused-imports issues (ticket-ab768669)
- Fix magic-numbers issues (ticket-8ca833d9)
- Fix relative-imports issues (ticket-e5642dd3)
- Fix string-concat issues (ticket-641d8e69)
- Fix unused-imports issues (ticket-a5077152)
- Fix magic-numbers issues (ticket-0487a08e)
- Fix relative-imports issues (ticket-324dc5cf)
- Fix string-concat issues (ticket-bb95b5f9)
- Fix unused-imports issues (ticket-2aa65e51)
- Fix magic-numbers issues (ticket-676ef054)
- Fix relative-imports issues (ticket-9941d570)
- Fix relative-imports issues (ticket-c2f00350)
- Fix relative-imports issues (ticket-080f216b)
- Fix string-concat issues (ticket-48462f01)
- Fix unused-imports issues (ticket-29495091)
- Fix magic-numbers issues (ticket-d31dfb9b)
- Fix relative-imports issues (ticket-f315565a)
- Fix string-concat issues (ticket-8458508f)
- Fix magic-numbers issues (ticket-0b4c8ed0)
- Fix relative-imports issues (ticket-dc7acf2d)
- Fix unused-imports issues (ticket-de8f7d4b)
- Fix relative-imports issues (ticket-fcea634e)
- Fix string-concat issues (ticket-301d676e)
- Fix magic-numbers issues (ticket-b7085e6d)
- Fix relative-imports issues (ticket-06442ab5)
- Fix string-concat issues (ticket-49de510d)
- Fix unused-imports issues (ticket-fd3d1442)
- Fix magic-numbers issues (ticket-92ea8800)
- Fix relative-imports issues (ticket-13da5551)
- Fix string-concat issues (ticket-3bb341b2)
- Fix duplicate-imports issues (ticket-a83b31a4)
- Fix magic-numbers issues (ticket-9bcb47b8)
- Fix string-concat issues (ticket-d7a050af)
- Fix magic-numbers issues (ticket-c7798031)
- Fix relative-imports issues (ticket-6487dcc5)
- Fix string-concat issues (ticket-95c4c194)
- Fix unused-imports issues (ticket-a1542712)
- Fix duplicate-imports issues (ticket-2a943081)
- Fix magic-numbers issues (ticket-086b44c0)
- Fix ai-boilerplate issues (ticket-b8e7c186)
- Fix relative-imports issues (ticket-27cf267c)
- Fix ai-boilerplate issues (ticket-4d48f615)
- Fix string-concat issues (ticket-d7f5a390)
- Fix magic-numbers issues (ticket-cfde2831)
- Fix ai-boilerplate issues (ticket-66b55613)
- Fix unused-imports issues (ticket-d89d76e2)
- Fix relative-imports issues (ticket-787fb72f)
- Fix string-concat issues (ticket-18d61c63)
- Fix unused-imports issues (ticket-cdab6e2a)
- Fix relative-imports issues (ticket-ff694781)
- Fix unused-imports issues (ticket-7c5b4daf)
- Fix relative-imports issues (ticket-48c807a1)
- Fix string-concat issues (ticket-12d36626)
- Fix unused-imports issues (ticket-805bb865)
- Fix smart-return-type issues (ticket-5cef56ed)
- Fix unused-imports issues (ticket-75691d94)
- Fix string-concat issues (ticket-5c3b22d1)
- Fix unused-imports issues (ticket-0bd8f269)
- Fix magic-numbers issues (ticket-8c959a9b)
- Fix relative-imports issues (ticket-01f8a1f3)
- Fix string-concat issues (ticket-6b720d3e)
- Fix unused-imports issues (ticket-4dcee4cb)
- Fix wildcard-imports issues (ticket-8737fed7)
- Fix smart-return-type issues (ticket-8b469242)
- Fix ai-boilerplate issues (ticket-ee540d12)
- Fix smart-return-type issues (ticket-9cd5b50d)
- Fix string-concat issues (ticket-9a9cdeb4)
- Fix magic-numbers issues (ticket-cae5c09c)
- Fix ai-boilerplate issues (ticket-e20e318d)
- Fix smart-return-type issues (ticket-101fe399)
- Fix string-concat issues (ticket-81976633)
- Fix magic-numbers issues (ticket-3a9b6156)
- Fix llm-generated-code issues (ticket-baac5dc9)
- Fix ai-boilerplate issues (ticket-8c7b4fda)
- Fix relative-imports issues (ticket-1ef9fe7f)
- Fix string-concat issues (ticket-dfe69e93)
- Fix unused-imports issues (ticket-1ba5c4ef)
- Fix string-concat issues (ticket-be416c57)
- Fix relative-imports issues (ticket-b31c3e05)
- Fix duplicate-imports issues (ticket-86467609)
- Fix smart-return-type issues (ticket-076791c6)
- Fix string-concat issues (ticket-d12a9c42)
- Fix unused-imports issues (ticket-0601f3da)
- Fix llm-generated-code issues (ticket-7f1ef34e)
- Fix string-concat issues (ticket-34fab140)
- Fix smart-return-type issues (ticket-c9474cb4)
- Fix duplicate-imports issues (ticket-859ad4ef)
- Fix ai-boilerplate issues (ticket-e6252c36)
- Fix relative-imports issues (ticket-18c19642)
- Fix smart-return-type issues (ticket-a0b6eee0)
- Fix unused-imports issues (ticket-88ef9091)
- Fix ai-boilerplate issues (ticket-5e2e1328)
- Fix smart-return-type issues (ticket-30b709d8)
- Fix ai-boilerplate issues (ticket-e018eadf)
- Fix smart-return-type issues (ticket-88766500)
- Fix string-concat issues (ticket-3903c1ba)
- Fix ai-boilerplate issues (ticket-5f472c9e)
- Fix wildcard-imports issues (ticket-ccc9e07a)
- Fix smart-return-type issues (ticket-46f7a3bd)
- Fix smart-return-type issues (ticket-24a26300)
- Fix ai-boilerplate issues (ticket-d4a2b242)
- Fix wildcard-imports issues (ticket-e237cd3b)
- Fix smart-return-type issues (ticket-a885671e)
- Fix ai-boilerplate issues (ticket-a4da522b)
- Fix smart-return-type issues (ticket-a4a1ec9c)
- Fix string-concat issues (ticket-d397fa2e)
- Fix unused-imports issues (ticket-ea1942ae)
- Fix magic-numbers issues (ticket-421095fe)
- Fix ai-boilerplate issues (ticket-a484943d)

### Docs
- Update context.md
- Update project/context.md

### Other
- Update analysis.toon.yaml
- Update batch_1/analysis.toon.yaml
- Update project/analysis.toon.yaml
- Update project/batch_1/analysis.toon.yaml
- Update project/root/analysis.toon.yaml
- Update root/analysis.toon.yaml

### Docs
- Update context.md
- Update project/README.md
- Update project/context.md

### Other
- Update analysis.toon.yaml
- Update batch_1/analysis.toon.yaml
- Update project/analysis.toon.yaml
- Update project/batch_1/analysis.toon.yaml
- Update project/root/analysis.toon.yaml
- Update root/analysis.toon.yaml

### Docs
- Update project/context.md

### Test
- Update tests/test_analyzer.py

### Other
- Update code2llm/exporters/mermaid_exporter.py
- Update project/analysis.toon.yaml
- Update project/calls.mmd
- Update project/calls.png
- Update project/compact_flow.mmd
- Update project/compact_flow.png
- Update project/flow.mmd
- Update project/flow.png
- Update project/index.html
- Update project/map.toon.yaml

### Docs
- Update project/README.md
- Update project/context.md

### Other
- Update project/analysis.toon.yaml
- Update project/calls.mmd
- Update project/calls.png
- Update project/compact_flow.mmd
- Update project/compact_flow.png
- Update project/evolution.toon.yaml
- Update project/flow.mmd
- Update project/index.html
- Update project/map.toon.yaml
- Update project/project.toon.yaml
- ... and 1 more files

### Docs
- Update project/context.md

### Test
- Update tests/test_prompt_txt.py

### Other
- Update code2llm/cli_exports/prompt.py
- Update project/analysis.toon.yaml
- Update project/calls.mmd
- Update project/calls.png
- Update project/flow.png
- Update project/index.html
- Update project/map.toon.yaml

### Docs
- Update project/README.md
- Update project/context.md

### Other
- Update code2llm/cli_exports/prompt.py
- Update project/analysis.toon.yaml
- Update project/calls.mmd
- Update project/calls.png
- Update project/compact_flow.mmd
- Update project/compact_flow.png
- Update project/evolution.toon.yaml
- Update project/flow.mmd
- Update project/flow.png
- Update project/index.html
- ... and 3 more files

### Test
- Update tests/test_prompt_txt.py

### Other
- Update code2llm/cli_exports/prompt.py
- Update code2llm/exporters/readme_exporter.py

### Docs
- Update project/context.md

### Other
- Update project/analysis.toon.yaml
- Update project/calls.mmd
- Update project/calls.png
- Update project/compact_flow.mmd
- Update project/compact_flow.png
- Update project/flow.mmd
- Update project/flow.png
- Update project/index.html
- Update project/map.toon.yaml

### Docs
- Update project/context.md

### Other
- Update project/analysis.toon.yaml
- Update project/calls.mmd
- Update project/calls.png
- Update project/compact_flow.mmd
- Update project/flow.mmd
- Update project/flow.png
- Update project/index.html
- Update project/map.toon.yaml

### Docs
- Update project/README.md
- Update project/context.md

### Test
- Update tests/test_project_toon_export.py
- Update tests/test_prompt_txt.py

### Other
- Update code2llm/cli_exports/formats.py
- Update code2llm/cli_exports/prompt.py
- Update code2llm/cli_parser.py
- Update code2llm/exporters/readme_exporter.py

### Docs
- Update project/README.md
- Update project/context.md

### Other
- Update code2llm/cli_exports/formats.py
- Update code2llm/cli_exports/orchestrator.py
- Update project/analysis.toon.yaml
- Update project/calls.mmd
- Update project/calls.png
- Update project/compact_flow.mmd
- Update project/compact_flow.png
- Update project/evolution.toon.yaml
- Update project/flow.mmd
- Update project/flow.png
- ... and 3 more files

### Docs
- Update README.md
- Update project/README.md
- Update project/context.md

### Other
- Update code2llm/cli_parser.py
- Update code2llm/exporters/readme_exporter.py
- Update project/analysis.toon.yaml
- Update project/calls.mmd
- Update project/calls.png
- Update project/flow.mmd
- Update project/index.html
- Update project/map.toon.yaml

### Docs
- Update project/README.md
- Update project/context.md

### Docs
- Update project/README.md
- Update project/context.md

### Test
- Update tests/test_prompt_txt.py

### Other
- Update code2llm/cli_exports/prompt.py
- Update code2llm/exporters/readme_exporter.py
- Update project/analysis.toon.yaml
- Update project/calls.mmd
- Update project/calls.png
- Update project/compact_flow.mmd
- Update project/compact_flow.png
- Update project/evolution.toon.yaml
- Update project/flow.mmd
- Update project/flow.png
- ... and 3 more files

### Docs
- Update README.md
- Update context.md
- Update project/README.md
- Update project/context.md

### Other
- Update analysis.toon.yaml
- Update batch_1/analysis.toon.yaml
- Update code2llm/cli_commands.py
- Update code2llm/cli_parser.py
- Update code2llm/exporters/project_yaml_exporter.py
- Update code2llm/exporters/readme_exporter.py
- Update code2llm/exporters/report_generators.py
- Update project/analysis.toon.yaml
- Update project/batch_1/analysis.toon.yaml
- Update project/root/analysis.toon.yaml
- ... and 1 more files

### Other
- Update code2llm/cli_analysis.py
- Update code2llm/cli_commands.py
- Update code2llm/cli_exports/formats.py
- Update code2llm/cli_exports/orchestrator.py
- Update code2llm/cli_exports/prompt.py
- Update code2llm/cli_parser.py
- Update code2llm/exporters/project_yaml_exporter.py
- Update code2llm/exporters/readme_exporter.py
- Update code2llm/exporters/report_generators.py
- Update code2llm/exporters/toon_view.py
- ... and 1 more files

### Other
- Update analysis.toon.yaml
- Update batch_1/analysis.toon.yaml
- Update project/calls.mmd
- Update project/calls.png
- Update project/compact_flow.mmd
- Update project/compact_flow.png
- Update project/flow.mmd
- Update project/index.html
- Update project/project.toon
- Update project/prompt.txt
- ... and 2 more files

### Other
- Update project/validation.toon

### Docs
- Update docs/README.md
- Update project/README.md
- Update project/context.md

### Other
- Update project/analysis.json
- Update project/analysis.toon.yaml
- Update project/analysis.yaml
- Update project/calls.mmd
- Update project/calls.png
- Update project/compact_flow.mmd
- Update project/compact_flow.png
- Update project/duplication.toon.yaml
- Update project/evolution.toon.yaml
- Update project/flow.mmd
- ... and 3 more files

### Docs
- Update project/README.md
- Update project/context.md

### Other
- Update code2llm/cli_exports/formats.py
- Update project/analysis.json
- Update project/analysis.toon.yaml
- Update project/analysis.yaml
- Update project/batch_1/analysis.toon.yaml
- Update project/batch_1/evolution.toon.yaml
- Update project/batch_1/map.toon.yaml
- Update project/calls.mmd
- Update project/calls.png
- Update project/evolution.toon.yaml
- ... and 8 more files

### Other
- Update code2llm/cli_exports/formats.py

### Docs
- Update project/context.md

### Other
- Update project/analysis.json
- Update project/analysis.yaml
- Update project/calls.mmd
- Update project/calls.png
- Update project/flow.mmd
- Update project/flow.png
- Update project/index.html
- Update project/map.yaml
- Update project/toon.yaml

### Docs
- Update project/context.md

### Other
- Update project/analysis.json
- Update project/analysis.yaml
- Update project/calls.mmd
- Update project/calls.png
- Update project/flow.mmd
- Update project/flow.png
- Update project/index.html
- Update project/map.yaml
- Update project/toon.yaml

### Docs
- Update project/context.md

### Other
- Update project/analysis.json
- Update project/analysis.yaml
- Update project/calls.mmd
- Update project/calls.png
- Update project/evolution.yaml
- Update project/flow.mmd
- Update project/flow.png
- Update project/index.html
- Update project/map.yaml
- Update project/toon.yaml

### Docs
- Update project/context.md

### Other
- Update code2llm/cli_exports/formats.py

### Docs
- Update project/README.md
- Update project/context.md

### Other
- Update code2llm/cli_exports/formats.py
- Update project/analysis.json
- Update project/calls.mmd
- Update project/calls.png
- Update project/compact_flow.mmd
- Update project/compact_flow.png
- Update project/flow.mmd
- Update project/flow.png
- Update project/index.html

### Docs
- Update project/README.md
- Update project/context.md

### Other
- Update project/analysis.json
- Update project/analysis.toon.yaml
- Update project/analysis.yaml
- Update project/calls.mmd
- Update project/calls.png
- Update project/compact_flow.mmd
- Update project/evolution.toon.yaml
- Update project/flow.mmd
- Update project/flow.png
- Update project/index.html
- ... and 1 more files

### Docs
- Update project/README.md
- Update project/context.md

### Test
- Update tests/test_prompt_txt.py

### Other
- Update code2llm/analysis/pipeline_detector.py
- Update code2llm/cli_analysis.py
- Update code2llm/cli_commands.py
- Update code2llm/exporters/evolution_exporter.py
- Update code2llm/exporters/map_exporter.py
- Update code2llm/exporters/project_yaml_exporter.py
- Update project/analysis.json
- Update project/analysis.toon.yaml
- Update project/analysis.yaml
- Update project/calls.mmd
- ... and 8 more files

### Docs
- Update project/README.md
- Update project/context.md

### Other
- Update code2llm/cli_exports/formats.py
- Update code2llm/cli_exports/prompt.py
- Update code2llm/cli_parser.py
- Update code2llm/exporters/__init__.py
- Update code2llm/exporters/evolution_exporter.py
- Update code2llm/exporters/flow_exporter.py
- Update code2llm/exporters/map_exporter.py
- Update code2llm/exporters/readme_exporter.py
- Update code2llm/exporters/toon/metrics.py
- Update code2llm/exporters/toon/module_detail.py
- ... and 12 more files

### Other
- Update code2llm/analysis/call_graph.py
- Update code2llm/analysis/cfg.py
- Update code2llm/analysis/coupling.py
- Update code2llm/analysis/data_analysis.py
- Update code2llm/analysis/dfg.py
- Update code2llm/analysis/pipeline_detector.py
- Update code2llm/analysis/side_effects.py
- Update code2llm/analysis/smells.py
- Update code2llm/analysis/type_inference.py
- Update code2llm/cli_exports/formats.py
- ... and 12 more files

### Docs
- Update project/README.md
- Update project/context.md

### Docs
- Update project/context.md

### Other
- Update code2llm/cli_exports/formats.py
- Update code2llm/cli_exports/orchestrator.py
- Update code2llm/cli_parser.py
- Update code2llm/core/file_analyzer.py
- Update code2llm/core/lang/cpp.py
- Update code2llm/core/lang/csharp.py
- Update code2llm/core/lang/go_lang.py
- Update code2llm/core/lang/java.py
- Update code2llm/core/lang/php.py
- Update code2llm/core/lang/ruby.py
- ... and 14 more files

### Docs
- Update project/README.md
- Update project/context.md

### Other
- Update code2llm/core/lang/base.py
- Update project/analysis.json
- Update project/analysis.toon
- Update project/analysis.yaml
- Update project/calls.mmd
- Update project/calls.png
- Update project/compact_flow.mmd
- Update project/compact_flow.png
- Update project/evolution.toon
- Update project/flow.mmd
- ... and 3 more files

### Docs
- Update project/README.md
- Update project/context.md

### Other
- Update code2llm/core/file_analyzer.py
- Update code2llm/core/lang/base.py
- Update code2llm/core/lang/cpp.py
- Update code2llm/core/lang/csharp.py
- Update code2llm/core/lang/java.py
- Update code2llm/core/lang/php.py
- Update code2llm/core/lang/ruby.py
- Update code2llm/core/lang/typescript.py
- Update code2llm/core/refactoring.py
- Update project/analysis.json
- ... and 11 more files

### Docs
- Update project/README.md
- Update project/context.md

### Test
- Update tests/test_advanced_analysis.py

### Other
- Update code2llm/core/__init__.py
- Update code2llm/core/analyzer.py
- Update code2llm/core/core/__init__.py
- Update code2llm/core/file_analyzer.py
- Update code2llm/core/file_cache.py
- Update code2llm/core/file_filter.py
- Update code2llm/core/lang/__init__.py
- Update code2llm/core/lang/base.py
- Update code2llm/core/lang/cpp.py
- Update code2llm/core/lang/csharp.py
- ... and 21 more files

### Docs
- Update project/README.md
- Update project/context.md

### Test
- Update tests/test_format_quality.py

### Docs
- Update project/README.md
- Update project/context.md

### Test
- Update tests/test_format_quality.py

### Other
- Update code2llm/exporters/index_generator.py
- Update code2llm/exporters/toon/metrics.py
- Update code2llm/exporters/toon/renderer.py
- Update project/analysis.json
- Update project/analysis.toon
- Update project/analysis.yaml
- Update project/calls.mmd
- Update project/calls.png
- Update project/compact_flow.mmd
- Update project/compact_flow.png
- ... and 5 more files

### Docs
- Update project/README.md
- Update project/context.md

### Other
- Update code2llm/cli_parser.py
- Update code2llm/exporters/project_yaml_exporter.py
- Update code2llm/exporters/readme_exporter.py
- Update code2llm/exporters/report_generators.py
- Update project/analysis.toon
- Update project/batch_1/analysis.toon
- Update project/calls.mmd
- Update project/calls.png
- Update project/compact_flow.mmd
- Update project/compact_flow.png
- ... and 11 more files

### Docs
- Update context.md
- Update project/README.md
- Update project/context.md

### Other
- Update analysis.toon
- Update batch_1/analysis.toon
- Update project/analysis.toon
- Update project/batch_1/analysis.toon
- Update project/root/analysis.toon
- Update root/analysis.toon

### Other
- Update code2llm/cli_exports/formats.py
- Update code2llm/cli_parser.py
- Update code2llm/exporters/project_yaml_exporter.py
- Update code2llm/exporters/readme_exporter.py
- Update code2llm/exporters/report_generators.py
- Update code2llm/exporters/toon/metrics.py

### Docs
- Update README.md
- Update context.md
- Update project/README.md
- Update project/context.md

### Test
- Update tests/test_format_quality.py
- Update tests/test_prompt_txt.py
- Update tests/test_toon_v2.py

### Other
- Update analysis.toon
- Update batch_1/analysis.toon
- Update code2llm/cli_commands.py
- Update code2llm/cli_exports/orchestrator.py
- Update code2llm/cli_exports/prompt.py
- Update code2llm/cli_parser.py
- Update code2llm/exporters/__init__.py
- Update code2llm/exporters/index_generator.py
- Update code2llm/exporters/map_exporter.py
- Update code2llm/exporters/readme_exporter.py
- ... and 19 more files

### Docs
- Update README.md
- Update context.md
- Update project/README.md
- Update project/context.md

### Other
- Update analysis.toon
- Update batch_1/analysis.toon
- Update code2llm/exporters/mermaid_exporter.py
- Update project/analysis.toon
- Update project/batch_1/analysis.toon
- Update project/root/analysis.toon
- Update root/analysis.toon

### Other
- Update code2llm/core/large_repo.py
- Update code2llm/core/repo_files.py

### Other
- Update code2llm/cli_analysis.py
- Update code2llm/cli_parser.py
- Update code2llm/core/analyzer.py
- Update code2llm/core/config.py
- Update code2llm/core/core/file_filter.py
- Update code2llm/core/core/lang/cpp.py
- Update code2llm/core/gitignore.py

### Other
- Update code2llm/analysis/data_analysis.py
- Update code2llm/analysis/type_inference.py
- Update code2llm/cli.py
- Update code2llm/cli_commands.py
- Update code2llm/cli_parser.py
- Update code2llm/core/core/file_analyzer.py
- Update code2llm/core/core/lang/__init__.py
- Update code2llm/core/core/lang/base.py
- Update code2llm/core/core/lang/cpp.py
- Update code2llm/core/core/lang/csharp.py
- ... and 11 more files

### Docs
- Update README.md
- Update context.md
- Update project/README.md
- Update project/context.md

### Test
- Update tests/test_nonpython_cc_calls.py

### Other
- Update analysis.toon
- Update batch_1/analysis.toon
- Update code2llm/core/core/file_analyzer.py
- Update project/analysis.toon
- Update project/batch_1/analysis.toon
- Update project/root/analysis.toon
- Update root/analysis.toon

### Docs
- Update README.md
- Update context.md
- Update project/README.md
- Update project/context.md

### Other
- Update analysis.toon
- Update batch_1/analysis.toon
- Update project/analysis.toon
- Update project/batch_1/analysis.toon
- Update project/root/analysis.toon
- Update root/analysis.toon

### Docs
- Update README.md
- Update context.md
- Update project/README.md
- Update project/context.md

### Other
- Update analysis.toon
- Update batch_1/analysis.toon
- Update project/analysis.toon
- Update project/batch_1/analysis.toon
- Update project/root/analysis.toon
- Update root/analysis.toon

### Other
- Update code2llm/cli_exports/formats.py
- Update code2llm/exporters/context_exporter.py
- Update code2llm/exporters/html_dashboard.py
- Update code2llm/exporters/toon_view.py

### Docs
- Update README.md
- Update context.md
- Update project/README.md
- Update project/context.md

### Other
- Update analysis.toon
- Update batch_1/analysis.toon
- Update code2llm/exporters/readme_exporter.py
- Update code2llm/exporters/toon/renderer.py
- Update project/analysis.toon
- Update project/batch_1/analysis.toon
- Update project/root/analysis.toon
- Update root/analysis.toon

### Test
- Update tests/test_multilanguage_e2e.py

### Other
- Update code2llm/core/analyzer.py
- Update code2llm/core/config.py
- Update code2llm/core/core/file_analyzer.py
- Update code2llm/exporters/map_exporter.py
- Update code2llm/exporters/project_yaml_exporter.py
- Update code2llm/exporters/toon/helpers.py

### Docs
- Update README.md
- Update context.md
- Update project/README.md
- Update project/context.md

### Other
- Update analysis.toon
- Update project/analysis.toon
- Update project/batch_1/analysis.toon
- Update project/root/analysis.toon

### Other
- Update code2llm/api.py

### Docs
- Update project/README.md
- Update project/context.md

### Docs
- Update project/README.md
- Update project/context.md

### Test
- Update test_dynamic/README.md
- Update test_dynamic/analysis.toon
- Update test_dynamic/batch_1/analysis.toon
- Update test_dynamic/batch_1/context.md
- Update test_dynamic/batch_1/evolution.toon
- Update test_dynamic/context.md
- Update test_dynamic/evolution.toon
- Update test_dynamic/root/analysis.toon
- Update test_dynamic/root/context.md
- Update test_dynamic/root/evolution.toon
- ... and 24 more files

### Other
- Update code2llm/cli_exports/prompt.py

### Docs
- Update README.md
- Update context.md
- Update project/README.md
- Update project/context.md

### Test
- Update test_prompt/README.md
- Update test_prompt/analysis.toon
- Update test_prompt/batch_1/analysis.toon
- Update test_prompt/batch_1/context.md
- Update test_prompt/batch_1/evolution.toon
- Update test_prompt/context.md
- Update test_prompt/evolution.toon
- Update test_prompt/project.toon
- Update test_prompt/prompt.txt
- Update test_prompt/root/analysis.toon
- ... and 2 more files

### Other
- Update analysis.toon
- Update batch_1/analysis.toon
- Update code2llm/cli_exports/prompt.py
- Update project.sh
- Update project/analysis.toon
- Update project/dashboard.html
- Update project/evolution.toon
- Update project/project.toon
- Update project/project.yaml
- Update project/prompt.txt
- ... and 1 more files

### Summary

refactor(goal): code analysis engine

### Docs

- docs: update README
- docs: update context.md
- docs: update README
- docs: update context.md

### Test

- update tests/test_prompt_txt.py

### Other

- update analysis.toon
- update batch_1/analysis.toon
- update code2llm/cli.py
- update code2llm/cli_analysis.py
- update code2llm/cli_exports.py
- update code2llm/cli_exports/__init__.py
- update code2llm/cli_exports/code2logic.py
- update code2llm/cli_exports/formats.py
- update code2llm/cli_exports/orchestrator.py
- update code2llm/cli_exports/prompt.py
- ... and 6 more


### Summary

refactor(docs): code analysis engine

### Docs

- docs: update README
- docs: update context.md
- docs: update README
- docs: update context.md
- docs: update README
- docs: update context.md

### Other

- update code2llm/exporters/article_view.py
- update code2llm/exporters/context_view.py
- update code2llm/exporters/html_dashboard.py
- update code2llm/exporters/project_yaml_exporter.py
- update code2llm/exporters/report_generators.py
- update code2llm/exporters/toon_view.py
- update project/analysis.json
- update project/analysis.toon
- config: update analysis.yaml
- update project/calls.mmd
- ... and 17 more


### Summary

feat(docs): code analysis engine

### Docs

- docs: update README
- docs: update context.md

### Other

- update project/analysis.json
- update project/analysis.toon
- config: update analysis.yaml
- update project/dashboard.html
- update project/evolution.toon
- update project/flow.toon
- update project/map.toon
- update project/project.toon
- config: update project.yaml
- update project/prompt.txt


### Summary

feat(goal): CLI interface improvements

### Other

- update code2llm/cli.py


### Summary

refactor(goal): CLI interface improvements

### Other

- update code2llm/cli_exports.py


### Summary

refactor(docs): code analysis engine

### Docs

- docs: update README
- docs: update context.md
- docs: update README
- docs: update context.md

### Other

- update analysis.toon
- update batch_1/analysis.toon
- update code2llm/cli.py
- update code2llm/cli_exports.py
- update code2llm/core/large_repo.py
- update code2llm/exporters/__init__.py
- update code2llm/exporters/project_yaml_exporter.py
- update code2llm/exporters/report_generators.py
- scripts: update project.sh
- update project/analysis.toon
- ... and 2 more


### Summary

feat(docs): code analysis engine

### Docs

- docs: update README
- docs: update context.md
- docs: update README
- docs: update context.md

### Other

- update analysis.toon
- update batch_1/analysis.toon
- scripts: update project.sh
- update project/analysis.toon
- update project/root/analysis.toon
- update root/analysis.toon


### Summary

refactor(docs): code analysis engine

### Docs

- docs: update context.md

### Other

- update project/analysis.toon
- update project/batch_1/analysis.toon
- update project/root/analysis.toon


### Summary

refactor(docs): code analysis engine

### Docs

- docs: update README
- docs: update context.md

### Other

- update code2llm/__init__.py
- update code2llm/analysis/__init__.py
- update code2llm/analysis/call_graph.py
- update code2llm/core/__init__.py
- update code2llm/core/core/file_analyzer.py
- update code2llm/core/core/refactoring.py
- scripts: update project.sh
- update project/analysis.toon
- update project/batch_1/analysis.toon
- update project/batch_1/evolution.toon
- ... and 4 more


### Summary

feat(docs): code analysis engine

### Docs

- docs: update README
- docs: update context.md
- docs: update README
- docs: update context.md

### Other

- update analysis.toon
- update batch_1/analysis.toon
- scripts: update project.sh
- update project/analysis.toon
- update project/batch_1/analysis.toon
- update project/batch_1/evolution.toon
- update project/evolution.toon
- update project/project.toon
- update project/prompt.txt
- update project/root/analysis.toon
- ... and 2 more


### Summary

feat(None): deep code analysis engine with 2 supporting modules

### Other

- update requirements.txt


### Summary

refactor(goal): code analysis engine

### Other

- update code2llm/__main__.py
- update code2llm/analysis/call_graph.py
- update code2llm/cli.py
- update code2llm/core/core/file_analyzer.py


### Summary

refactor(docs): code analysis engine

### Docs

- docs: update context.md

### Other

- update analysis.toon
- update batch_1/analysis.toon
- update root/analysis.toon


### Summary

refactor(goal): code analysis engine

### Other

- update code2llm/analysis/call_graph.py
- update code2llm/cli.py
- update code2llm/core/core/file_analyzer.py


### Summary

feat(goal): CLI interface improvements

### Other

- update code2llm/cli.py


### Summary

refactor(code2llm): code analysis engine

### Other

- update code2llm/core/analyzer.py


### Summary

feat(goal): CLI interface improvements

### Other

- update code2llm/cli.py
- update code2llm/core/large_repo.py


### Summary

feat(docs): code analysis engine

### Docs

- docs: update README
- docs: update context.md
- docs: update README
- docs: update context.md

### Other

- update code2llm/core/large_repo.py
- update project_multi/analysis.toon
- update project_multi/examples_04_domain_specific/analysis.toon
- update project_multi/project.toon
- update project_multi/prompt.txt
- update project_single/project.toon
- update project_single/prompt.txt


### Summary

feat(goal): CLI interface improvements

### Other

- update code2llm/cli_exports.py


### Summary

feat(goal): CLI interface improvements

### Docs

- docs: update README

### Other

- update code2llm/cli.py
- update code2llm/cli_exports.py
- update code2llm/core/large_repo.py
- update code2llm/core/toon_size_manager.py


### Summary

docs(docs): configuration management system

### Docs

- docs: update README


### Summary

refactor(goal): CLI interface improvements

### Other

- update code2llm/cli.py
- update code2llm/cli_exports.py
- update code2llm/core/large_repo.py
- update code2llm/parsers/toon_parser.py
- update validate_toon.py


### Summary

refactor(docs): code analysis engine

### Docs

- docs: update README
- docs: update context.md

### Other

- update analysis.toon
- update code2llm/core/analyzer.py


### Summary

refactor(code2llm): code analysis engine

### Other

- update code2llm/core/analyzer.py
- update code2llm/core/core/refactoring.py


### Summary

feat(goal): code analysis engine

### Docs

- docs: update context.md

### Other

- update code2llm/cli.py
- update project/analysis.toon
- update project/evolution.toon
- update project/project.toon


### Summary

feat(docs): code analysis engine

### Docs

- docs: update README
- docs: update context.md

### Test

- update tests/test_prompt_txt.py

### Other

- update benchmarks/project_generator.py
- update code2llm/cli.py
- update project/analysis.toon
- update project/evolution.toon


### Summary

refactor(benchmarks): configuration management system

### Other

- update benchmarks/project_generator.py


### Summary

refactor(benchmarks): configuration management system

### Other

- update benchmarks/project_generator.py


### Summary

feat(config): CLI interface improvements

### Docs

- docs: update README

### Test

- update tests/test_prompt_txt.py

### Build

- update pyproject.toml
- update setup.py

### Other

- update code2llm/cli.py
- update requirements.txt


### Summary

refactor(goal): code analysis engine

### Docs

- docs: update README
- docs: update context.md

### Config

- config: update goal.yaml

### Other

- update .gitignore
- update code2llm/cli.py
- update code2llm/exporters/context_exporter.py
- update code2llm/generators/llm_flow.py
- update project/analysis.toon
- update project/evolution.toon
- update project/project.toon


### Summary

refactor(quality): structural refactoring — 9 god-functions split, CC̄ 5.1→4.8, max-CC 63→35

### Changed

- **Structural Refactoring** — 9 high-CC functions split into focused helpers:
  - `cli.main()` CC=63 → 7 functions (`_run_analysis`, `_run_exports`, etc.)
  - `ToonExporter._render_details` CC=31 → 5 methods
  - `ToonExporter._compute_file_metrics` CC=21 → 4 methods
  - `ToonExporter._compute_health` CC=28 → 4 methods
  - `EvolutionExporter._build_context` CC=31 → 3 methods
  - `MermaidExporter.export` CC=22 → 4 methods + `_get_cc` helper
  - `MapExporter._render_details` CC=24 → 3 methods
  - `validate_mermaid_file` CC=42 → 3 functions + 2 module-level helpers
  - `fix_mermaid_file` CC=25 → 3 functions + 2 module-level helpers
- **Metrics before/after**: CC̄ 5.1→4.8, max-CC 63→35 (↓44%), high-CC(≥15) 27→21 (↓22%)
- **Version bump** to 0.5.1

### Added

- `examples/claude-code/` — code2llm + Claude Code refactoring workflow
- `examples/shell-llm/` — code2llm + aider / llm / sgpt integration
- `examples/litellm/` — code2llm + LiteLLM Python automation
- `benchmarks/benchmark_evolution.py` — auto before/after CC benchmark

---

### Summary

fix(exporters): 3 bug fixes + improvement + new EvolutionExporter for ranked refactoring queues

### Added

- **EvolutionExporter** → `evolution.toon` — prioritized refactoring queue:
  - `NEXT[N]` — ranked actions by impact (CC × fan_out)
  - `RISKS[N]` — breaking change identification
  - `METRICS-TARGET` — measurable goals vs current baseline (CC̄, max-CC, god-modules)
  - `HISTORY` — comparison with previous run
  - CLI: `--format evolution` or included in `--format all`

### Fixed

- **MermaidExporter**: 3 output files were identical (all calling `export_call_graph`)
  - `flow.mmd` — full graph with CC-based node shapes and red/yellow styling
  - `calls.mmd` — edges only, no isolated nodes, LR layout
  - `compact_flow.mmd` — module-level aggregation with weighted cross-module edges
  - Human-readable node IDs (e.g. `core__ProjectAnalyzer_analyze`) instead of hashes
- **SideEffectDetector**: `dict.get()` falsely classified as IO
  - Extracted HTTP verbs to `HTTP_METHODS` with `HTTP_CALLERS` context check
  - Only `requests.get()`, `session.post()`, `httpx.put()` etc. trigger IO
- **COUPLING matrix**: improved callee resolution with candidate disambiguation
  - Collects all matching candidates, prefers same-package callees
- **PipelineDetector**: returns `None` for ambiguous callee matches to avoid phantom edges

---

### Summary

refactor(rename): code2flow → code2llm rename + structural cleanup + dead code removal

### Changed

- **Package rename**: `code2flow` → `code2llm` — folder, all imports, CLI entry point, documentation
- **CLI**: all 7 exporters now connected (ToonExporter, MapExporter, FlowExporter, ContextExporter, YAMLExporter, JSONExporter, MermaidExporter)
- **Generators**: moved root-level `llm_flow_generator.py`, `llm_task_generator.py`, `mermaid_generator.py` into `generators/` subpackage
- **Tests**: renamed sprint-based to feature-based names:
  - `test_sprint2_flow.py` → `test_flow_exporter.py`
  - `test_sprint3_pipelines.py` → `test_pipeline_detector.py`
  - `test_sprint4.py` → `test_deep_analysis.py`
  - `test_sprint5.py` → `test_prompt_engine.py`
- **Documentation**: updated all `.md` files with new project name

### Removed

- **`optimization/`** (1590L dead code) — 4 files, zero external imports
- **`visualizers/`** (150L dead code) — never imported from CLI or other modules

### Migration

- CLI command: `code2flow` → `code2llm`
- Python imports: `from code2flow import ...` → `from code2llm import ...`
- `LLMPromptExporter` still available as backward-compat alias for `ContextExporter`

---

### Summary

feat(rebrand): rename project from code2flow-toon to code2llm with LLM integration focus

### Changed

- **Package name**: `code2flow-toon` → `code2llm`
- **Documentation**: Updated all references to use new project name
- **Commands**: All CLI commands now use `code2llm`
- **Setup**: Updated setup.py and pyproject.toml with new name
- **Makefile**: All targets updated to use `code2llm` commands

### Summary

feat(quality): format quality benchmark + rename llm_exporter → context_exporter

### Added

- **Format Quality Benchmark** (`benchmarks/benchmark_format_quality.py`)
  - Ground-truth project with 8 known problems, 2 pipelines, 2 hub types
  - Evaluates problem_score, pipeline_score, hub_type_score, structural_score
  - Gap analysis per format — identifies what each format misses
  - JSON report saved to `reports/format_quality_*.json`
  - Results: flow.toon 79%, analysis.toon 66%, context.md 59%, project.map 21%

- **24 format quality tests** (`tests/test_format_quality.py`)
  - `TestAnalysisToon`: HEALTH, REFACTOR, COUPLING, severity, god_function, fan_out, layers
  - `TestFlowToon`: PIPELINES, TRANSFORMS, types, ETL stages, side_effects, contracts
  - `TestProjectMap`: modules, imports, signatures, types
  - `TestContextMd`: overview, entry_points, markdown
  - `TestCrossFormat`: uniqueness, complementarity, size difference

### Changed

- **Rename**: `llm_exporter.py` → `context_exporter.py`, `LLMPromptExporter` → `ContextExporter`
  - Backward-compat shim in `llm_exporter.py` re-exports old name
  - CLI updated to use `ContextExporter` throughout
- **Version bump** to 0.3.3

---

### Summary

feat(pipelines): networkx-based pipeline detection with domain grouping and entry/exit labeling

### Added

- **PipelineDetector** (`analysis/pipeline_detector.py`)
  - Builds directed call graph with `networkx.DiGraph`
  - Finds longest paths via `dag_longest_path` + DFS fallback for cycles
  - Classifies pipelines by domain: NLP, Analysis, Export, Refactor, Core, IO
  - Labels entry/exit points per pipeline
  - Aggregates purity per pipeline using `SideEffectDetector`
  - `Pipeline` and `PipelineStage` dataclasses with `to_dict()` support

- **22 new tests** (`tests/test_sprint3_pipelines.py`)
  - PipelineDetector: chain detection, entry/exit, purity, bottleneck, edge cases
  - Domain classification: NLP, Analysis, Export, Unknown
  - Multiple pipelines: ≥3 pipelines with ≥3 stages each (success metric ✅)
  - FlowExporter integration: domain tags, entry/exit markers, purity summary
  - Edge cases: cycles, self-recursion, diamond dependencies, long chains

### Changed

- **FlowExporter** now uses `PipelineDetector` instead of custom DFS
  - Replaced `_detect_pipelines`, `_trace_chain`, `_pipeline_name` with networkx
  - PIPELINES header shows domain summary: `PIPELINES[3] (Analysis:1, Export:1, NLP:1)`
  - Pipeline stages show ▶ (entry) and ■ (exit) markers
  - Pipeline header shows entry→exit type flow: `NLP [NLP]: str → IntentMatch`

- **Version bump** to 0.3.2

---

### Summary

feat(flow): AST-based type inference + side-effect detection for enhanced CONTRACTS and DATA_TYPES

### Added

- **TypeInferenceEngine** (`analysis/type_inference.py`)
  - Parses `->` return annotations from source AST
  - Extracts argument type hints (`arg: Type`)
  - Fallback: infers types from function name patterns (`parse_*` → str→dict)
  - Batch mode: `extract_all_types()` for all project functions

- **SideEffectDetector** (`analysis/side_effects.py`)
  - AST scan: detects `open()`, `write()`, `self.x = ...`, `global`, `del`
  - Classification: IO / Cache / Mutation / Pure
  - `SideEffectInfo` with detailed breakdown and summary
  - Heuristic fallback when source files unavailable

- **26 new tests** (`tests/test_sprint2_flow.py`)
  - TypeInferenceEngine: annotation extraction, defaults, signatures, batch
  - SideEffectDetector: IO, pure, mutation, summary, batch, heuristic
  - FlowExporter integration: contracts IN/OUT, data types, edge cases

### Changed

- **Enhanced CONTRACTS section** in `flow.toon`
  - Per-stage: IN types, OUT type, SIDE-EFFECT summary
  - INVARIANT inference (normalize → `len(output) <= len(input)`)
  - SMELL markers for CC ≥ 15

- **Enhanced DATA_TYPES section** in `flow.toon`
  - Source counts: `[N annotated, M inferred / T functions]`
  - Hub-type split recommendations with named sub-interfaces
  - e.g. `AnalysisResult → split into: StructureResult, MetricsResult, FlowResult`

- **FlowExporter** now uses `TypeInferenceEngine` and `SideEffectDetector`
  - Typed signatures from AST (not just arg names)
  - Purity scoring from AST body scan (not just name heuristics)

- **Version bump** to 0.3.1

---

### Summary

refactor(exporters): format taxonomy — 4 files, 4 purposes (map, toon, flow, context)

### Added

- **MapExporter** (`project.map`) — structural map format
  - Modules, imports, signatures, type information
  - Formerly `project.toon` — renamed for clarity
  - Purpose: "what exists and how it's connected"

- **FlowExporter** (`flow.toon`) — **NEW** data-flow format
  - PIPELINES: auto-detected call chains with purity scoring
  - TRANSFORMS: high fan-out functions sorted by fan-out
  - CONTRACTS: per-pipeline input→output with CC and purity
  - DATA_TYPES: consumed/produced counts, hub-type detection
  - SIDE_EFFECTS: IO/Cache/Mutation/Pure classification
  - Purpose: "how data flows through the system"

- **New CLI format options**
  - `--format map` — generate project.map (structural map)
  - `--format flow` — generate flow.toon (data-flow analysis)
  - `--format context` — generate context.md (LLM narrative)
  - `--format all` — now generates all 8 formats (toon, map, flow, context, yaml, json, mermaid, png)

### Changed

- **Renamed `llm_prompt.md` → `context.md`** — LLM narrative context
  - LLMPromptExporter now outputs `context.md` by default
  - Purpose: "understand the system to rebuild it"

- **Format taxonomy** based on benchmark analysis (TODO/action_plan_v3.md)
  - `project.map` — structure (modules, imports, signatures)
  - `analysis.toon` — health diagnostics (CC, coupling, smells)
  - `flow.toon` — data flow (pipelines, contracts, hub-types)
  - `context.md` — LLM narrative (architecture, patterns, API)

- **Version bump** to 0.3.0

### Docs

- Updated README.md with new format taxonomy and examples
- Updated TODO.md with Sprint 2-4 roadmap from action_plan_v3
- Updated CHANGELOG.md, ROADMAP.md, REFACTORING_PLAN.md

---

### Summary

feat(toon): implement TOON v2 format with health-first design

### Added

- **TOON v2 Format** - complete reimplementation of the exporter
  - HEALTH section: issues sorted by severity (🔴/🟡), limited to 20 items
  - REFACTOR section: actionable steps with concrete recommendations
  - COUPLING matrix: package-level fan-in/fan-out analysis, limited to 15 packages
  - LAYERS section: package hierarchy with inline markers
  - DUPLICATES detection: find classes with identical method sets (≥60% overlap)
  - FUNCTIONS section: filtered by CC≥10, limited to 50 items
  - HOTSPOTS ranking: top 10 functions by fan-out with descriptions
  - CLASSES section: visual bar charts (████), max CC markers
  - D: details section: per-module call flow signatures

- **Smart Filtering**
  - EXCLUDE_PATTERNS: venv, site-packages, node_modules, .git, etc.
  - Automatic exclusion of virtual environments
  - Configurable limits: MAX_HEALTH_ISSUES, MAX_COUPLING_PACKAGES, MAX_FUNCTIONS_SHOWN

- **Inline Markers**
  - `!!` for CC≥15 (critical)
  - `!` for CC≥10 (high)
  - `×DUP` for duplicate classes
  - `hub` for high fan-in packages
  - `SMELL` for high fan-out packages

### Test

- add tests/test_toon_v2.py with 17 comprehensive tests
- all tests passing (17/17)

### Docs

- update README.md with TOON v2 format documentation


### Summary

docs(docs): deep code analysis engine with 5 supporting modules

### Docs

- docs: update README


### Summary

refactor(docs): intelligent code analysis pipeline

### Docs

- docs: update llm_prompt.md
- docs: update 01_god_function_god_function_normalize_llm_task.md
- docs: update 02_god_function_god_function_parse_llm_task_text.md
- docs: update 03_god_function_god_function_main.md
- docs: update 04_god_function_god_function_validate_mermaid_file.md
- docs: update 05_god_function_god_function_fix_mermaid_file.md
- docs: update 06_god_function_god_function_generate_pngs.md
- docs: update 07_god_function_god_function_generate_single_png.md
- docs: update 08_god_function_god_function_strip_label_segments.md
- docs: update 09_god_function_god_function___init__.md
- ... and 676 more

### Test

- update tests/test_sprint5.py

### Config

- config: update goal.yaml

### Other

- update TICKET
- config: update analysis.yaml
- update final_prompts/call_graph.png
- update final_prompts/calls.mmd
- update final_prompts/cfg.png
- update final_prompts/compact_flow.mmd
- update final_prompts/flow.mmd
- scripts: update project.sh
- update project.toon
- config: update analysis.yaml
- ... and 5 more


### Summary

feat(goal): deep code analysis engine with 7 supporting modules

### Ci

- config: update publish.yml

### Config

- config: update goal.yaml

### Other

- scripts: update project.sh


### Summary

refactor(docs): code analysis engine

### Docs

- docs: update TODO.md
- docs: update context.md
- docs: update context_final.md
- docs: update context_fixed.md
- docs: update fast_analysis_report.md

### Config

- config: update goal.yaml

### Other

- update debug/.code2flow_cache/__init___067a3ea9a806bdcd.pkl
- update debug/.code2flow_cache/__init___06ee3b304cbac344.pkl
- update debug/.code2flow_cache/__init___07004ae5fc0b63a4.pkl
- update debug/.code2flow_cache/__init___092c164e1ea3ed2a.pkl
- update debug/.code2flow_cache/__init___1306939d2650ad0a.pkl
- update debug/.code2flow_cache/__init___1435b739d4a93c01.pkl
- update debug/.code2flow_cache/__init___1a3f34073e505d94.pkl
- update debug/.code2flow_cache/__init___20b71d7ad5e01760.pkl
- update debug/.code2flow_cache/__init___385814d063e205eb.pkl
- update debug/.code2flow_cache/__init___563e1960e3f8fe02.pkl
- ... and 222 more


# Changelog

All notable changes to this project will be documented in this file.

The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

#### Core Analysis Engine
- **Optimized ProjectAnalyzer** with caching and parallel processing
  - FileCache with TTL support for AST parsing results
  - Parallel file analysis using ProcessPoolExecutor
  - Configurable performance settings (FAST_CONFIG, DETAILED_CONFIG)
  - Memory-efficient depth limiting for CFG generation

- **Enhanced Filtering**
  - FastFileFilter with glob pattern matching
  - Exclude test files, private methods, properties
  - Min function lines threshold
  - Configurable include/exclude patterns

- **Comprehensive Code Model**
  - FlowNode, FlowEdge for CFG representation
  - FunctionInfo, ClassInfo, ModuleInfo with metadata
  - Pattern detection (recursion, state machines)
  - Compact JSON/YAML output with optional full details

#### NLP Processing Pipeline
- **Query Normalization (1a-1e)**
  - Unicode NFKC normalization
  - Lowercase conversion
  - Punctuation removal
  - Whitespace normalization
  - Stopword removal (multilingual)

- **Intent Matching (2a-2e)**
  - Fuzzy matching with configurable algorithms
  - Keyword matching with weighted scoring
  - Context window scoring for disambiguation
  - Multi-intent resolution strategies (best_match, combine, sequential)

- **Entity Resolution (3a-3e)**
  - Type-based entity extraction (function, class, module, variable, file)
  - Name matching with similarity threshold
  - Context-aware disambiguation
  - Hierarchical resolution (Class.method -> method)
  - Alias resolution (short -> qualified names)

- **Pipeline Integration (4a-4e)**
  - Orchestration with stage tracking
  - Result aggregation and confidence scoring
  - Fallback handling for low-confidence queries
  - Formatted output with action recommendations

- **Multilingual Support**
  - English and Polish query support
  - Cross-language fuzzy matching
  - Language-specific stopwords
  - YAML-driven configuration

#### Export Formats
- **JSON Exporter** - Machine-readable analysis output
- **YAML Exporter** - Human-readable with compact/full modes
- **Mermaid Exporter** - Flowchart and call graph visualization
- **LLMPromptExporter** - LLM-ready analysis summaries
- **GraphVisualizer** - NetworkX/matplotlib PNG generation

#### CLI Enhancements
- Improved argument parsing with subcommands
- Automatic PNG generation from Mermaid files
- LLM flow generation command
- Verbose output with progress reporting
- Multiple output format support

#### Testing & Quality
- **Comprehensive Test Suite**
  - Unit tests for all core components
  - Edge case tests (empty projects, syntax errors, unicode)
  - Performance benchmarks
  - Integration tests (NLP + Analysis workflow)
  - NLP pipeline tests (steps 1a-4e validation)

- **Benchmarking**
  - Performance tests for large projects
  - Cache effectiveness measurement
  - Parallel vs sequential comparison
  - Memory usage validation

#### Documentation
- Complete API documentation
- Usage examples and tutorials
- Performance optimization guide
- Multilingual query examples
- Configuration reference

### Changed
- Refactored monolithic flow.py into modular package structure
- Improved error handling throughout codebase
- Enhanced type hints for better IDE support
- Updated setup.py for PyPI publication readiness

### Fixed
- Import errors in CLI module
- Attribute mismatches between models and exporters
- Parallel processing pickle compatibility issues
- FlowEdge attribute access (condition -> conditions)

### Added
- Initial project structure
- Basic AST-based code analysis
- Control flow graph generation
- Call graph extraction
- Pattern detection (recursion, loops)
- Mermaid diagram export
- Command-line interface
- Initial test suite

---

### Planned for 0.3.0
- [ ] Semantic code search using embeddings
- [ ] Advanced pattern detection (factory, singleton, observer)
- [ ] Interactive web UI (Streamlit/Gradio)
- [ ] VS Code extension
- [ ] Support for additional languages (JavaScript, TypeScript)

### Planned for 0.4.0
- [ ] Real-time code analysis via file watching
- [ ] Integration with Git for diff analysis
- [ ] Custom pattern definition via YAML
- [ ] Plugin system for third-party extensions
- [ ] Docker container for easy deployment

### Planned for 1.0.0
- [ ] Complete API stability
- [ ] Comprehensive security audit
- [ ] Enterprise features (SSO, audit logs)
- [ ] Performance optimizations for 100k+ LOC projects
- [ ] Full documentation with video tutorials

## Contributing

Please report issues and suggest features via GitHub Issues.

## Credits

Developed by the STTS Project team.