diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index 14e8071..39558df 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -31,7 +31,7 @@ jobs:
       uses: actions/checkout@v4
 
     - name: conda/mamba
-      uses: mamba-org/setup-micromamba@v1
+      uses: mamba-org/setup-micromamba@v2
       with:
           environment-file: environment.yml
           create-args: >-
diff --git a/sequana_pipelines/mapper/config.yaml b/sequana_pipelines/mapper/config.yaml
index 8314851..c26571f 100644
--- a/sequana_pipelines/mapper/config.yaml
+++ b/sequana_pipelines/mapper/config.yaml
@@ -23,14 +23,14 @@ apptainers:
     bamtools: https://zenodo.org/record/10211475/files/bamtools_2.5.2.img
     bowtie2: https://zenodo.org/record/8037162/files/sequana_minimal_23.6.13.img
     bwa: https://zenodo.org/record/8037162/files/sequana_minimal_23.6.13.img
-    deeptools: https://zenodo.org/record/7341710/files/sequana_tools_0.14.5.img
+    deeptools: https://zenodo.org/record/18257162/files/sequana_tools_26.1.14.img
     graphviz: https://zenodo.org/record/7928262/files/graphviz_7.0.5.img
-    minimap2: https://zenodo.org/record/7341710/files/sequana_tools_0.14.5.img
+    minimap2: https://zenodo.org/record/18257162/files/sequana_tools_26.1.14.img
     multiqc: https://zenodo.org/record/10205070/files/multiqc_1.16.0.img
     samtools: https://zenodo.org/record/7437898/files/samtools_1.16.1.img
     sequana_coverage:  https://zenodo.org/record/13946414/files/sequana_coverage_0.18.0.img
     seqkit: https://zenodo.org/record/7821924/files/seqkit_2.4.0.img
-    subread: https://zenodo.org/record/7341710/files/sequana_tools_0.14.5.img
+    subread: https://zenodo.org/record/18257162/files/sequana_tools_26.1.14.img
     mosdepth: https://zenodo.org/record/12805460/files/mosdepth_0.3.8.img