Flow cells from 18.03.2020

[deyazoubi]

a list of open and closed To-Dos:

1. 200318_SN737_0494_ACE121ACXX

• Transfer raw data to HPC
• check NAS space capacity
• backup
• create samplesheet and push to github
• inform wetlab to delete data on instrument
• inform analysts about demux quality
• delete data from pipeline server
• upload to Snupy
• inform analysts about data upload to Snupy and send status_update

2. 200318_SN737_0495_BCDYWTACXX

• Transfer raw data to HPC
• check NAS space capacity
• backup
• create samplesheet and push to github
• inform wetlab to delete data on instrument
• inform analysts about demux quality
• delete data from pipeline server
• upload to Snupy
• inform analysts about data upload to Snupy and send status_update

3. 200402_SN737_0496_ACE11FACXX

• Transfer raw data to HPC
• check NAS space capacity
• backup
• create samplesheet and push to github
• inform wetlab to delete data on instrument
• inform analysts about demux quality
• delete data from pipeline server
• upload to Snupy
• inform analysts about data upload to Snupy and send status_update

*both in Branch name 180320 because of trio
check Snakemake for more details

[deyazoubi]

doule check Transfer raw data to HPC after HPC /GPFG problem
for 200318_SN737_0495_BCDYWTACXX there are 2 cases

1. per Tumor
2. post Tumor
   each have to process spreatly