shaman/_pkgdown.yml at master · tanaylab/shaman · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
navbar:
  title: "shaman"
  type: inverse
  left:
    - text: "Home"
      href: index.html
    - text: "Usage"
      href: articles/shaman-package.html
      icon: fa-road
    - text: "Import"
      href: articles/import.html
      icon: fa-filter
    - text: "Reference"
      href: reference/index.html
      icon: fa-th-list
  right:
    - icon: fa-github-square
      href: https://github.org/tanaylab/shaman

reference:
- title: Data processing
  contents:
  - shaman_shuffle_hic_track
  - shaman_score_hic_track
  - shaman_shuffle_and_score_hic_mat
  - shaman_score_hic_points
  - shaman_score_hic_mat
  - shaman_kk_norm
  - shaman_generate_feature_grid
- title: Visualization
  desc:  Methods for graphical visualizing
  contents:
  - shaman_plot_map_score_with_annotations
  - shaman_gplot_map_score
  - shaman_gplot_map
  - shaman_plot_feature_grid
  - shaman_score_pal
- title: configuration
  desc: Parameter configuration utility functions
  contents:
  - shaman_get_test_track_db
  - get_param_list
  - get_param
  - init_params