From 4fd405e8500eca541b5355828a5616a9c7fca67e Mon Sep 17 00:00:00 2001 From: moinfar Date: Thu, 9 Jul 2026 16:33:54 +0200 Subject: [PATCH 1/5] Update changelog for release 0.2.7 with release date --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index d3a1644..fc5006c 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -13,7 +13,7 @@ and this project adheres to [Semantic Versioning][]. ### Added -## [0.2.7] +## [0.2.7] - 2026-07-09 ### Added - Add `drvi.utils.port_to_scvi_tools` to migrate a trained/saved drvi-py model into a checkpoint loadable by `scvi.external.DRVI` (available in scvi-tools 1.5.0). Pure checkpoint surgery — no model is instantiated. Unsupported capabilities raise `DRVIPortError` with a link to open an issue. From df3ec099c37773018bdbb47bb47dd8a4ac4c23af Mon Sep 17 00:00:00 2001 From: moinfar Date: Thu, 9 Jul 2026 17:23:34 +0200 Subject: [PATCH 2/5] Update sketch and logo --- .github/misc/concept.svg | 9 +-------- .github/misc/logo.svg | 1 + README.md | 9 +++++++-- 3 files changed, 9 insertions(+), 10 deletions(-) create mode 100644 .github/misc/logo.svg diff --git a/.github/misc/concept.svg b/.github/misc/concept.svg index 2396e0d..68f97a3 100644 --- a/.github/misc/concept.svg +++ b/.github/misc/concept.svg @@ -1,8 +1 @@ - - - - - - - - +DR 10+Gene scoresDR 3+Gene scoresDR 11-Gene scoresDR 12+Gene scoresDR 13+Gene scoresInterpretableintegrationRare cell-typeidentificationAnnotationrefinementIdentification of sharedbiological processesTransfer tounseen datasetsNaivecellsTransfer all factorsincluding DR 3+MemorycellsInterferon signalingMigratory DCsT cell subtypesGene expressionParameters of thegenerative distribution✂✂✂Disentangled latentrepresentationPoolingLatent encoderAdditive decoderSplitEffect of on the reconstructionof each geneBatch |D \ No newline at end of file diff --git a/.github/misc/logo.svg b/.github/misc/logo.svg new file mode 100644 index 0000000..04e3eb7 --- /dev/null +++ b/.github/misc/logo.svg @@ -0,0 +1 @@ + \ No newline at end of file diff --git a/README.md b/README.md index 2189ccd..7840582 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,9 @@ -# DRVI +

+ + + DRVI + +

[![Build][badge-build]][link-build] [![Tests][badge-tests]][link-tests] @@ -14,7 +19,7 @@ [badge-pyver]: https://img.shields.io/pypi/pyversions/drvi-py [badge-pypi-downloads]: https://static.pepy.tech/personalized-badge/drvi-py?period=total&units=INTERNATIONAL_SYSTEM&left_color=BLACK&right_color=GREEN&left_text=%F0%9F%93%A6+downloads -Unsupervised Deep Disentangled Representation of Single-Cell Omics +# DRVI (Unsupervised Deep Disentangled Representation of Single-Cell Omics)

From 04e98bc49111a9120a66f5a0a4bfd43fc9805846 Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Thu, 9 Jul 2026 15:23:45 +0000 Subject: [PATCH 3/5] [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --- .github/misc/concept.svg | 2 +- .github/misc/logo.svg | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/misc/concept.svg b/.github/misc/concept.svg index 68f97a3..b551189 100644 --- a/.github/misc/concept.svg +++ b/.github/misc/concept.svg @@ -1 +1 @@ -DR 10+Gene scoresDR 3+Gene scoresDR 11-Gene scoresDR 12+Gene scoresDR 13+Gene scoresInterpretableintegrationRare cell-typeidentificationAnnotationrefinementIdentification of sharedbiological processesTransfer tounseen datasetsNaivecellsTransfer all factorsincluding DR 3+MemorycellsInterferon signalingMigratory DCsT cell subtypesGene expressionParameters of thegenerative distribution✂✂✂Disentangled latentrepresentationPoolingLatent encoderAdditive decoderSplitEffect of on the reconstructionof each geneBatch |D \ No newline at end of file +DR 10+Gene scoresDR 3+Gene scoresDR 11-Gene scoresDR 12+Gene scoresDR 13+Gene scoresInterpretableintegrationRare cell-typeidentificationAnnotationrefinementIdentification of sharedbiological processesTransfer tounseen datasetsNaivecellsTransfer all factorsincluding DR 3+MemorycellsInterferon signalingMigratory DCsT cell subtypesGene expressionParameters of thegenerative distribution✂✂✂Disentangled latentrepresentationPoolingLatent encoderAdditive decoderSplitEffect of on the reconstructionof each geneBatch |D diff --git a/.github/misc/logo.svg b/.github/misc/logo.svg index 04e3eb7..f3cd112 100644 --- a/.github/misc/logo.svg +++ b/.github/misc/logo.svg @@ -1 +1 @@ - \ No newline at end of file + From c59bd42b9353a22829a913673ef06a6ba444505d Mon Sep 17 00:00:00 2001 From: moinfar Date: Thu, 9 Jul 2026 17:31:07 +0200 Subject: [PATCH 4/5] Update sketch and logo --- .github/misc/concept.svg | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/misc/concept.svg b/.github/misc/concept.svg index b551189..d5f023a 100644 --- a/.github/misc/concept.svg +++ b/.github/misc/concept.svg @@ -1 +1 @@ -DR 10+Gene scoresDR 3+Gene scoresDR 11-Gene scoresDR 12+Gene scoresDR 13+Gene scoresInterpretableintegrationRare cell-typeidentificationAnnotationrefinementIdentification of sharedbiological processesTransfer tounseen datasetsNaivecellsTransfer all factorsincluding DR 3+MemorycellsInterferon signalingMigratory DCsT cell subtypesGene expressionParameters of thegenerative distribution✂✂✂Disentangled latentrepresentationPoolingLatent encoderAdditive decoderSplitEffect of on the reconstructionof each geneBatch |D +DR 10+Gene scoresDR 3+Gene scoresDR 11-Gene scoresDR 12+Gene scoresDR 13+Gene scoresInterpretableintegrationRare cell-typeidentificationAnnotationrefinementIdentification of sharedbiological processesTransfer tounseen datasetsNaivecellsTransfer all factorsincluding DR 3+MemorycellsInterferon signalingMigratory DCsT cell subtypesGene expressionParameters of thegenerative distribution✂✂✂Disentangled latentrepresentationPoolingLatent encoderAdditive decoderSplitEffect of on the reconstructionof each geneBatch |D \ No newline at end of file From 8f45376bda642cfce50eb2752c921789572e4f20 Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Thu, 9 Jul 2026 15:31:21 +0000 Subject: [PATCH 5/5] [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --- .github/misc/concept.svg | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/misc/concept.svg b/.github/misc/concept.svg index d5f023a..7923a0a 100644 --- a/.github/misc/concept.svg +++ b/.github/misc/concept.svg @@ -1 +1 @@ -DR 10+Gene scoresDR 3+Gene scoresDR 11-Gene scoresDR 12+Gene scoresDR 13+Gene scoresInterpretableintegrationRare cell-typeidentificationAnnotationrefinementIdentification of sharedbiological processesTransfer tounseen datasetsNaivecellsTransfer all factorsincluding DR 3+MemorycellsInterferon signalingMigratory DCsT cell subtypesGene expressionParameters of thegenerative distribution✂✂✂Disentangled latentrepresentationPoolingLatent encoderAdditive decoderSplitEffect of on the reconstructionof each geneBatch |D \ No newline at end of file +DR 10+Gene scoresDR 3+Gene scoresDR 11-Gene scoresDR 12+Gene scoresDR 13+Gene scoresInterpretableintegrationRare cell-typeidentificationAnnotationrefinementIdentification of sharedbiological processesTransfer tounseen datasetsNaivecellsTransfer all factorsincluding DR 3+MemorycellsInterferon signalingMigratory DCsT cell subtypesGene expressionParameters of thegenerative distribution✂✂✂Disentangled latentrepresentationPoolingLatent encoderAdditive decoderSplitEffect of on the reconstructionof each geneBatch |D