Figures

[Hrovatin]

Batch effects strength:

• One example (single ct)

cVAE KLw:

• cVAE metrics on scaled and unscaled
• Embedding dimension sizes
• Examle UMAPs (r=1 for min and max param of KLw and z_cyc_std)

Metrics analysis:

• scIB metrics bias (graph vs distance)
• Moran's I genes examples

Performance:

• Metrics full (supp)
• Metrics best
• UMAPs

Adversarial (scGLUE):

• (Merging cts UMAP) - maybe not as already in one of the top runs
• Jaccard per ct with different z dist cycle and lam_align weights; show proportions of system per ct and integration score; also add rel gene weight (as affects integration)

Saturn cluster prior:

• UMAP with clusters for top run

VAMP:

• ?