Hetero/parameter_2.txt at master · thomaskf/Hetero · GitHub

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# Parameter file shows the detailed parameters of the rate matrix of each edge leading to the corresponding node

#Node	S1	S2	S3	S4	S5	S6	Pi_1	Pi_2	Pi_3	Pi_4
A	1.91928	2.13915	1.59805	2.58998	1.50701	1.00000	0.27305	0.29478	0.16273	0.26944
B	1.54547	3.27634	1.64800	4.70045	3.30819	1.00000	0.20892	0.35914	0.26171	0.17023
C	2.67365	4.14835	1.73040	4.36875	2.94216	1.00000	0.24797	0.28768	0.18112	0.28323
D	1.54547	3.27634	1.64800	4.70045	3.30819	1.00000	0.20892	0.35914	0.26171	0.17023
E	2.95455	13.8448	2.56968	7.04199	16.4082	1.00000	0.05323	0.15744	0.66395	0.12538
F	2.95455	13.8448	2.56968	7.04199	16.4082	1.00000	0.05323	0.15744	0.66395	0.12538
G	2.95455	13.8448	2.56968	7.04199	16.4082	1.00000	0.05323	0.15744	0.66395	0.12538
H	2.95455	13.8448	2.56968	7.04199	16.4082	1.00000	0.05323	0.15744	0.66395	0.12538
1	2.95455	13.8448	2.56968	7.04199	16.4082	1.00000	0.05323	0.15744	0.66395	0.12538
2	2.95455	13.8448	2.56968	7.04199	16.4082	1.00000	0.05323	0.15744	0.66395	0.12538
3	2.95455	13.8448	2.56968	7.04199	16.4082	1.00000	0.05323	0.15744	0.66395	0.12538
4	2.67365	4.14835	1.73040	4.36875	2.94216	1.00000	0.24797	0.28768	0.18112	0.28323
5	2.67365	4.14835	1.73040	4.36875	2.94216	1.00000	0.24797	0.28768	0.18112	0.28323
6	1.54547	3.27634	1.64800	4.70045	3.30819	1.00000	0.20892	0.35914	0.26171	0.17023

# Pi_1, Pi_2, Pi_3, Pi_4 are the equilibrium distribution of A, C, G, T respectively. Their sum should equal to 1.
# Note: The labels of the terminal/internal nodes are same as those in the tree file