seroreconstruct/_pkgdown.yml at main · timktsang/seroreconstruct · GitHub

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url: https://timktsang.github.io/seroreconstruct/

template:
  bootstrap: 5

reference:
  - title: "Model Fitting"
    desc: "Core functions for running the MCMC and extracting results"
    contents:
      - sero_reconstruct
      - summary.seroreconstruct_fit
      - summary.seroreconstruct_joint
      - summary.seroreconstruct_multi

  - title: "Visualization"
    desc: "Publication-ready plots"
    contents:
      - plot_diagnostics
      - plot_trajectory
      - plot_boosting
      - plot_waning
      - plot_infection_prob

  - title: "Tables"
    desc: "Summary tables for model output"
    contents:
      - table_parameters
      - table_infections

  - title: "Simulation"
    desc: "Generate synthetic data"
    contents:
      - simulate_data

  - title: "Data"
    desc: "Bundled example datasets"
    contents:
      - inputdata
      - flu_activity
      - para1
      - para2

  - title: "S3 Methods"
    desc: "Print and subset methods"
    contents:
      - print.seroreconstruct_fit
      - print.seroreconstruct_joint
      - print.seroreconstruct_multi
      - print.summary.seroreconstruct_fit
      - print.summary.seroreconstruct_joint
      - print.summary.seroreconstruct_multi
      - "[[.seroreconstruct_multi"

  - title: "Deprecated"
    contents:
      - output_model_estimate

articles:
  - title: "Getting Started"
    contents:
      - introduction
  - title: "Methodology"
    contents:
      - methodology