Web app for interacting with Google DeepMind's AlphaGenome model — interval predictions, variant effect analysis, and visualization
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Feb 14, 2026 - JavaScript
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alphagenome
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Run AlphaGenome on DecodeME GWAS summary statistics files or those from other studies using regenie format
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Feb 8, 2026 - Python
R interface to Google DeepMind AlphaGenome API. Bridging gRPC-based multimodal genomic predictions (RNA-seq, ATAC, Splicing, 3D Genome) into R-native workflows.
bioinformatics rna-seq genomics grpc computational-biology epigenetics bioconductor deepmind r-package alphagenome
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May 3, 2026 - R
A pangenome-aware variant calling pipeline with model tuning and variant interpretation.
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May 14, 2026 - Nextflow
Methodological investigation of calibration-statistic mismatch in deep learning regulatory variant prediction. Quantifies the saturation effect when published single-track quantile calibration is composed with max-over-tracks aggregation, and demonstrates the matched-calibration fix on AlphaGenome with Tewhey 2016 MPRA data.
bioinformatics gwas computational-biology quantile-normalization mpra fine-mapping regulatory-genomics alphagenome variant-scoring
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May 12, 2026 - Python
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