diff --git a/Cargo.lock b/Cargo.lock
index 558cf95..5689ce8 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -49,18 +49,18 @@ dependencies = [
 
 [[package]]
 name = "anstyle-query"
-version = "1.1.4"
+version = "1.1.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9e231f6134f61b71076a3eab506c379d4f36122f2af15a9ff04415ea4c3339e2"
+checksum = "40c48f72fd53cd289104fc64099abca73db4166ad86ea0b4341abe65af83dadc"
 dependencies = [
  "windows-sys",
 ]
 
 [[package]]
 name = "anstyle-wincon"
-version = "3.0.10"
+version = "3.0.11"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "3e0633414522a32ffaac8ac6cc8f748e090c5717661fddeea04219e2344f5f2a"
+checksum = "291e6a250ff86cd4a820112fb8898808a366d8f9f58ce16d1f538353ad55747d"
 dependencies = [
  "anstyle",
  "once_cell_polyfill",
@@ -156,9 +156,9 @@ checksum = "5e764a1d40d510daf35e07be9eb06e75770908c27d411ee6c92109c9840eaaf7"
 
 [[package]]
 name = "buffer-redux"
-version = "1.0.2"
+version = "1.1.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "4e8acf87c5b9f5897cd3ebb9a327f420e0cae9dd4e5c1d2e36f2c84c571a58f1"
+checksum = "431a9cc8d7efa49bc326729264537f5e60affce816c66edf434350778c9f4f54"
 dependencies = [
  "memchr",
 ]
@@ -181,9 +181,9 @@ checksum = "175812e0be2bccb6abe50bb8d566126198344f707e304f45c648fd8f2cc0365e"
 
 [[package]]
 name = "bytemuck"
-version = "1.24.0"
+version = "1.25.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1fbdf580320f38b612e485521afda1ee26d10cc9884efaaa750d383e13e3c5f4"
+checksum = "c8efb64bd706a16a1bdde310ae86b351e4d21550d98d056f22f8a7f7a2183fec"
 
 [[package]]
 name = "byteorder"
@@ -202,9 +202,9 @@ dependencies = [
 
 [[package]]
 name = "cc"
-version = "1.2.44"
+version = "1.2.55"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "37521ac7aabe3d13122dc382493e20c9416f299d2ccd5b3a5340a2570cdeb0f3"
+checksum = "47b26a0954ae34af09b50f0de26458fa95369a0d478d8236d3f93082b219bd29"
 dependencies = [
  "find-msvc-tools",
  "shlex",
@@ -233,9 +233,9 @@ dependencies = [
 
 [[package]]
 name = "clap"
-version = "4.5.51"
+version = "4.5.56"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "4c26d721170e0295f191a69bd9a1f93efcdb0aff38684b61ab5750468972e5f5"
+checksum = "a75ca66430e33a14957acc24c5077b503e7d374151b2b4b3a10c83b4ceb4be0e"
 dependencies = [
  "clap_builder",
  "clap_derive",
@@ -243,9 +243,9 @@ dependencies = [
 
 [[package]]
 name = "clap_builder"
-version = "4.5.51"
+version = "4.5.56"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "75835f0c7bf681bfd05abe44e965760fea999a5286c6eb2d59883634fd02011a"
+checksum = "793207c7fa6300a0608d1080b858e5fdbe713cdc1c8db9fb17777d8a13e63df0"
 dependencies = [
  "anstream",
  "anstyle",
@@ -255,9 +255,9 @@ dependencies = [
 
 [[package]]
 name = "clap_derive"
-version = "4.5.49"
+version = "4.5.55"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "2a0b5487afeab2deb2ff4e03a807ad1a03ac532ff5a2cee5d86884440c7f7671"
+checksum = "a92793da1a46a5f2a02a6f4c46c6496b28c43638adea8306fcb0caa1634f24e5"
 dependencies = [
  "heck",
  "proc-macro2",
@@ -267,15 +267,15 @@ dependencies = [
 
 [[package]]
 name = "clap_lex"
-version = "0.7.6"
+version = "0.7.7"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "a1d728cc89cf3aee9ff92b05e62b19ee65a02b5702cff7d5a377e32c6ae29d8d"
+checksum = "c3e64b0cc0439b12df2fa678eae89a1c56a529fd067a9115f7827f1fffd22b32"
 
 [[package]]
 name = "cmake"
-version = "0.1.54"
+version = "0.1.57"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e7caa3f9de89ddbe2c607f4101924c5abec803763ae9534e4f4d7d8f84aa81f0"
+checksum = "75443c44cd6b379beb8c5b45d85d0773baf31cce901fe7bb252f4eff3008ef7d"
 dependencies = [
  "cc",
 ]
@@ -413,9 +413,9 @@ checksum = "835a3dc7d1ec9e75e2b5fb4ba75396837112d2060b03f7d43bc1897c7f7211da"
 
 [[package]]
 name = "find-msvc-tools"
-version = "0.1.4"
+version = "0.1.9"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "52051878f80a721bb68ebfbc930e07b65ba72f2da88968ea5c06fd6ca3d3a127"
+checksum = "5baebc0774151f905a1a2cc41989300b1e6fbb29aff0ceffa1064fdd3088d582"
 
 [[package]]
 name = "fixedbitset"
@@ -425,9 +425,9 @@ checksum = "1d674e81391d1e1ab681a28d99df07927c6d4aa5b027d7da16ba32d1d21ecd99"
 
 [[package]]
 name = "flate2"
-version = "1.1.5"
+version = "1.1.8"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "bfe33edd8e85a12a67454e37f8c75e730830d83e313556ab9ebf9ee7fbeb3bfb"
+checksum = "b375d6465b98090a5f25b1c7703f3859783755aa9a80433b36e0379a3ec2f369"
 dependencies = [
  "crc32fast",
  "libz-ng-sys",
@@ -471,9 +471,9 @@ dependencies = [
 
 [[package]]
 name = "hashbrown"
-version = "0.16.0"
+version = "0.16.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "5419bdc4f6a9207fbeba6d11b604d481addf78ecd10c11ad51e76c2f6482748d"
+checksum = "841d1cc9bed7f9236f321df977030373f4a4163ae1a7dbfe1a51a2c1a51d9100"
 
 [[package]]
 name = "heck"
@@ -483,12 +483,12 @@ checksum = "2304e00983f87ffb38b55b444b5e3b60a884b5d30c0fca7d82fe33449bbe55ea"
 
 [[package]]
 name = "indexmap"
-version = "2.12.0"
+version = "2.13.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "6717a8d2a5a929a1a2eb43a12812498ed141a0bcfb7e8f7844fbdbe4303bba9f"
+checksum = "7714e70437a7dc3ac8eb7e6f8df75fd8eb422675fc7678aff7364301092b1017"
 dependencies = [
  "equivalent",
- "hashbrown 0.16.0",
+ "hashbrown 0.16.1",
 ]
 
 [[package]]
@@ -517,9 +517,9 @@ dependencies = [
 
 [[package]]
 name = "itoa"
-version = "1.0.15"
+version = "1.0.17"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "4a5f13b858c8d314ee3e8f639011f7ccefe71f97f96e50151fb991f267928e2c"
+checksum = "92ecc6618181def0457392ccd0ee51198e065e016d1d527a7ac1b6dc7c1f09d2"
 
 [[package]]
 name = "lazy_static"
@@ -535,21 +535,21 @@ checksum = "2c4a545a15244c7d945065b5d392b2d2d7f21526fba56ce51467b06ed445e8f7"
 
 [[package]]
 name = "libc"
-version = "0.2.177"
+version = "0.2.180"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "2874a2af47a2325c2001a6e6fad9b16a53b802102b528163885171cf92b15976"
+checksum = "bcc35a38544a891a5f7c865aca548a982ccb3b8650a5b06d0fd33a10283c56fc"
 
 [[package]]
 name = "libm"
-version = "0.2.15"
+version = "0.2.16"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f9fbbcab51052fe104eb5e5d351cf728d30a5be1fe14d9be8a3b097481fb97de"
+checksum = "b6d2cec3eae94f9f509c767b45932f1ada8350c4bdb85af2fcab4a3c14807981"
 
 [[package]]
 name = "libz-ng-sys"
-version = "1.1.22"
+version = "1.1.23"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "a7118c2c2a3c7b6edc279a8b19507672b9c4d716f95e671172dfa4e23f9fd824"
+checksum = "7bf914b7dd154ca9193afec311d8e39345c1bd93b48b3faa77329f0db8f553c0"
 dependencies = [
  "cmake",
  "libc",
@@ -557,9 +557,9 @@ dependencies = [
 
 [[package]]
 name = "libz-sys"
-version = "1.1.22"
+version = "1.1.23"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8b70e7a7df205e92a1a4cd9aaae7898dac0aa555503cc0a649494d0d60e7651d"
+checksum = "15d118bbf3771060e7311cc7bb0545b01d08a8b4a7de949198dec1fa0ca1c0f7"
 dependencies = [
  "cc",
  "libc",
@@ -596,9 +596,9 @@ checksum = "f52b00d39961fc5b2736ea853c9cc86238e165017a493d1d5c8eac6bdc4cc273"
 
 [[package]]
 name = "minimap2"
-version = "0.1.28+minimap2.2.30"
+version = "0.1.30+minimap2.2.30"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "57724668d18b7a2dd3ff9d39976f54e7c1e14814877eba31cad39bfee06eee15"
+checksum = "53212240e2efdddbf4aa7ae167f754ea9927a7154c81b58ae597ea77c43dc151"
 dependencies = [
  "libc",
  "minimap2-sys",
@@ -607,9 +607,9 @@ dependencies = [
 
 [[package]]
 name = "minimap2-sys"
-version = "0.1.24+minimap2.2.30"
+version = "0.1.30+minimap2.2.30"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "84d4c33ca5747a2ef8698720fd1e90635b0855f396aab445222a887184f55f14"
+checksum = "a0daecfcba542b29dab8ae9516581fa3595bb5a3704389ab5a7ed3ee6aacea58"
 dependencies = [
  "cc",
  "libz-sys",
@@ -778,15 +778,15 @@ checksum = "7edddbd0b52d732b21ad9a5fab5c704c14cd949e5e9a1ec5929a24fded1b904c"
 
 [[package]]
 name = "portable-atomic"
-version = "1.11.1"
+version = "1.13.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f84267b20a16ea918e43c6a88433c2d54fa145c92a811b5b047ccbe153674483"
+checksum = "c33a9471896f1c69cecef8d20cbe2f7accd12527ce60845ff44c153bb2a21b49"
 
 [[package]]
 name = "portable-atomic-util"
-version = "0.2.4"
+version = "0.2.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d8a2f0d8d040d7848a709caf78912debcc3f33ee4b3cac47d73d1e1069e83507"
+checksum = "7a9db96d7fa8782dd8c15ce32ffe8680bbd1e978a43bf51a34d39483540495f5"
 dependencies = [
  "portable-atomic",
 ]
@@ -802,18 +802,18 @@ dependencies = [
 
 [[package]]
 name = "proc-macro2"
-version = "1.0.103"
+version = "1.0.106"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "5ee95bc4ef87b8d5ba32e8b7714ccc834865276eab0aed5c9958d00ec45f49e8"
+checksum = "8fd00f0bb2e90d81d1044c2b32617f68fcb9fa3bb7640c23e9c748e53fb30934"
 dependencies = [
  "unicode-ident",
 ]
 
 [[package]]
 name = "quote"
-version = "1.0.41"
+version = "1.0.44"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "ce25767e7b499d1b604768e7cde645d14cc8584231ea6b295e9c9eb22c02e1d1"
+checksum = "21b2ebcf727b7760c461f091f9f0f539b77b8e87f2fd88131e7f1b433b3cece4"
 dependencies = [
  "proc-macro2",
 ]
@@ -930,9 +930,9 @@ checksum = "b39cdef0fa800fc44525c84ccb54a029961a8215f9619753635a9c0d2538d46d"
 
 [[package]]
 name = "ryu"
-version = "1.0.20"
+version = "1.0.22"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "28d3b2b1366ec20994f1fd18c3c594f05c5dd4bc44d8bb0c1c632c8d6829481f"
+checksum = "a50f4cf475b65d88e057964e0e9bb1f0aa9bbb2036dc65c64596b42932536984"
 
 [[package]]
 name = "safe_arch"
@@ -1000,9 +1000,9 @@ dependencies = [
 
 [[package]]
 name = "simd-adler32"
-version = "0.3.7"
+version = "0.3.8"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d66dc143e6b11c1eddc06d5c423cfc97062865baf299914ab64caa38182078fe"
+checksum = "e320a6c5ad31d271ad523dcf3ad13e2767ad8b1cb8f047f75a8aeaf8da139da2"
 
 [[package]]
 name = "statrs"
@@ -1043,9 +1043,9 @@ dependencies = [
 
 [[package]]
 name = "syn"
-version = "2.0.108"
+version = "2.0.114"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "da58917d35242480a05c2897064da0a80589a2a0476c9a3f2fdc83b53502e917"
+checksum = "d4d107df263a3013ef9b1879b0df87d706ff80f65a86ea879bd9c31f9b307c2a"
 dependencies = [
  "proc-macro2",
  "quote",
@@ -1238,18 +1238,18 @@ dependencies = [
 
 [[package]]
 name = "zerocopy"
-version = "0.8.27"
+version = "0.8.37"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "0894878a5fa3edfd6da3f88c4805f4c8558e2b996227a3d864f47fe11e38282c"
+checksum = "7456cf00f0685ad319c5b1693f291a650eaf345e941d082fc4e03df8a03996ac"
 dependencies = [
  "zerocopy-derive",
 ]
 
 [[package]]
 name = "zerocopy-derive"
-version = "0.8.27"
+version = "0.8.37"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "88d2b8d9c68ad2b9e4340d7832716a4d21a22a1154777ad56ea55c51a9cf3831"
+checksum = "1328722bbf2115db7e19d69ebcc15e795719e2d66b60827c6a69a117365e37a0"
 dependencies = [
  "proc-macro2",
  "quote",
diff --git a/Cargo.toml b/Cargo.toml
index 177f821..932ddcc 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -10,12 +10,12 @@ description = "A tool to filter fastq files"
 
 [dependencies]
 bio = "2.2.0"
-clap = { version = "4.5.37", features = ["derive"] }
+clap = { version = "4.5.56", features = ["derive"] }
 crossbeam-channel = "0.5"
 rayon = "1.7.0"
 approx = "0.5.1"
-minimap2 = "0.1.28"
-flate2 = { version = "1.1.0", features = [
+minimap2 = "0.1.30"
+flate2 = { version = "1.1.8", features = [
     "zlib-ng",
 ], default-features = false }
 xz2 = "0.1.7"