multiple fastq files

[lfrangeu]

Is it possible to use nanocomp to compar runs if each run contain several fastq.gz files ?

[wdecoster]

No, that is currently not supported. There is some code to do something similar with summary files, but that would require changes for the fastq files.

[lfrangeu]

Thank you for this quick response. I would really like to be able to do this in a future version. Declare folders instead of files for each run in the command line. I'm not a fan of very large files, and I'll have to concatenate all my fastq.gz to be able to use Nanocomp.

…

-- Lionel Frangeul Viruses and RNAi  Institut Pasteur, Université Paris Cité, CNRS UMR3569 25 rue du Dr ROUX, F-75015 Paris, France.

________________________________ De : Wouter De Coster ***@***.***> Envoyé : jeudi 16 novembre 2023 15:07:47 À : wdecoster/nanocomp Cc : Lionel FRANGEUL; Author Objet : Re: [wdecoster/nanocomp] multiple fastq files (Issue #74) No, that is currently not supported. There is some code to do something similar with summary files, but that would require changes for the fastq files. — Reply to this email directly, view it on GitHub<https://urldefense.com/v3/__https://github.com/wdecoster/nanocomp/issues/74*issuecomment-1814501974__;Iw!!JFdNOqOXpB6UZW0!t4onjXq4hmaWJlCTDl859bLeWzLgk5798YQXlVgU6oQc_5OeXy5-lUpMXuuHZu9-ShD9mU__-TCfCnIgS0XRoMmySJg$>, or unsubscribe<https://urldefense.com/v3/__https://github.com/notifications/unsubscribe-auth/AMC4VD65N4I7U6KQLMDSA6TYEYM3HAVCNFSM6AAAAAA7N7GIV2VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQMJUGUYDCOJXGQ__;!!JFdNOqOXpB6UZW0!t4onjXq4hmaWJlCTDl859bLeWzLgk5798YQXlVgU6oQc_5OeXy5-lUpMXuuHZu9-ShD9mU__-TCfCnIgS0XRZkO2OVg$>. You are receiving this because you authored the thread.Message ID: ***@***.***>

[wdecoster]

Yes, that makes sense. And you cannot use NanoComp at the summary or BAM/CRAM stage?