WINGS/pyproject.toml at main · zerotonin/WINGS · GitHub

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[build-system]
requires = ["setuptools>=68.0", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "wings-sim"
version = "0.2.0"
description = "Wolbachia Infection Numerical Growth Simulation — a spatially explicit ABM of Wolbachia spread in Tribolium beetles"
readme = "README.md"
license = {text = "MIT"}
requires-python = ">=3.9"
authors = [
    {name = "Bart Geurten", email = "bart.geurten@otago.ac.nz"},
    {name = "Christoph Bleidorn"},
    {name = "Yeganeh Gharabigloozare"},
]
keywords = ["wolbachia", "agent-based-model", "tribolium", "population-genetics", "cytoplasmic-incompatibility"]
classifiers = [
    "Development Status :: 4 - Beta",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: MIT License",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
]
dependencies = [
    "numpy>=1.21",
    "pandas>=1.3",
    "matplotlib>=3.5",
    "tqdm>=4.60",
    "scipy>=1.7",
]

[project.optional-dependencies]
gpu = ["torch>=2.0"]
docs = [
    "sphinx>=7.0",
    "sphinx-rtd-theme>=2.0",
    "sphinx-autodoc-typehints>=1.25",
    "myst-parser>=3.0",
]
dev = [
    "seaborn",
    "pytest>=7.0",
    "pytest-cov",
    "ruff",
]

[project.scripts]
wings-abm = "wings.models.gpu_abm:main"
wings-wfm = "wings.models.wfm:main"
wings-ingest = "wings.analysis.ingest:main"
wings-ingest-dp = "wings.analysis.ingest_delta_p:main"
wings-plot = "wings.analysis.plot_wings:main"
wings-plot-dp = "wings.analysis.plot_delta_p:main"

[project.urls]
Homepage = "https://github.com/zerotonin/WINGS"
Documentation = "https://zerotonin.github.io/WINGS"
Repository = "https://github.com/zerotonin/WINGS"
Issues = "https://github.com/zerotonin/WINGS/issues"

[tool.setuptools.packages.find]
include = ["wings*"]

[tool.ruff]
line-length = 100
target-version = "py39"

[tool.ruff.lint]
select = ["E", "F", "W", "I"]

[tool.pytest.ini_options]
testpaths = ["tests"]