ACCESS-NRI · lawrenceabird · Jun 3, 2025 · Jun 11, 2025 · Jun 12, 2025 · Jun 12, 2025
diff --git a/.github/workflows/common-workflow.yml b/.github/workflows/common-workflow.yml
@@ -75,10 +75,11 @@ jobs:
       - name: Install Python dependencies
         if: contains(inputs.interface, 'python')
         run: |
-          sudo apt-get install libpython${{ inputs.python_version }}-dev
-          sudo apt-get install python3-dev
+          sudo apt update
+          sudo apt install libpython${{ inputs.python_version }}-dev
+          sudo apt install python3-dev
           python -m pip install --upgrade pip
-          sudo apt-get update && sudo apt-get install -y python3-tk
+          sudo apt install -y python3-tk
           python -m pip install numpy scipy matplotlib nose
 
       - name: Build ISSM
@@ -90,7 +91,6 @@ jobs:
           export F90=$FC
           export MATLAB_ROOT=${{ steps.setup-matlab.outputs.matlabroot }}
           export PYTHON_ROOT=${{ env.pythonLocation }}
-          export NUMPY_ROOT=${{ env.LD_LIBRARY_PATH }}/python${{ inputs.python_version }}/site-packages/numpy
           ${{ inputs.build_command }}
 
       - name: Compile ISSM
@@ -177,7 +177,7 @@ jobs:
         if: contains( inputs.interface, 'python')
         run: |
           python -m pip install --upgrade pip
-          sudo apt-get update && sudo apt-get install -y python3-tk
+          sudo apt update && sudo apt install -y python3-tk
           python -m pip install numpy scipy matplotlib nose netCDF4
 
       - name: Run Python tests

diff --git a/.github/workflows/ubuntu-python.yml b/.github/workflows/ubuntu-python.yml
@@ -42,14 +42,13 @@ jobs:
         autoreconf -ivf
         ls ${ISSM_DIR}/externalpackages/petsc/install/bin/
         which mpicxx
-        ./configure --prefix=${ISSM_DIR} \
+        ./configure \
+        --prefix=${ISSM_DIR} \
         --disable-static \
         --enable-development \
         --enable-debugging \
         --with-numthreads=4 \
-        --with-python-version=3.12 \
-        --with-python-dir=$PYTHON_ROOT \
-        --with-python-numpy-dir=$NUMPY_ROOT \
+        --with-python=${PYTHON_ROOT}/bin/python3 \
         --with-fortran-lib="-L/usr/lib/x86_64-linux-gnu -lgfortran" \
         --with-mpi-include="${ISSM_DIR}/externalpackages/petsc/install/include" \
         --with-mpi-libflags="-L${ISSM_DIR}/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort" \

diff --git a/.gitignore b/.gitignore
@@ -2,6 +2,7 @@
 #==================
 *.a
 *.al
+*.js
 *.la
 *.lo
 *.mexa64
@@ -10,6 +11,7 @@
 *.pyo
 *.so
 *.so.[0-9]*
+*.wasm
 __pycache__
 bin/
 lib/

diff --git a/README.md b/README.md
@@ -1,15 +1,19 @@
 # Ice-sheet and Sea-level System Model - ISSM
+[![License](https://img.shields.io/badge/License-BSD_3--Clause-blue.svg)](https://opensource.org/licenses/BSD-3-Clause)
 [![Ubuntu Basic](https://github.com/ISSMteam/ISSM/actions/workflows/ubuntu-basic.yml/badge.svg)](https://github.com/ISSMteam/ISSM/actions/workflows/ubuntu-basic.yml)
-[![Ubuntu CodiPack](https://github.com/ISSMteam/ISSM/actions/workflows/ubuntu-codipack.yml/badge.svg)](https://github.com/ISSMteam/ISSM/actions/workflows/ubuntu-codipack.yml)
 [![Ubuntu Python](https://github.com/ISSMteam/ISSM/actions/workflows/ubuntu-python.yml/badge.svg)](https://github.com/ISSMteam/ISSM/actions/workflows/ubuntu-python.yml)
+[![Ubuntu CodiPack](https://github.com/ISSMteam/ISSM/actions/workflows/ubuntu-codipack.yml/badge.svg)](https://github.com/ISSMteam/ISSM/actions/workflows/ubuntu-codipack.yml)
 
 ## Description
 ISSM is a large-scale thermo-mechanical 2D/3D parallelized multi-purpose finite-element software dedicated to ice sheet and sea-level modeling.
 
+## Documentation
+<a href="https://issmteam.github.io/ISSM-Documentation" target="_blank">Just The Docs</a>
+
 ## Contact
- - Forum:	https://issm.ess.uci.edu/forum
- - GitHub:	https://github.com/ISSMteam/ISSM
- - Website:	https://issm.jpl.nasa.gov
+ - Bug Reporting: Please direct compile and run time bug reports to the 'Issues' page.
+ - Questions: Please direct questions about the use of ISSM (e.g. model setup, compute cluster configuration) to the 'Discussions' page.
+ - Website:	https://issm.jpl.nasa.gov (will be decommissioned soon)
 
 ## Checking Out a Copy of the Repository
 Navigate to the parent directory where you want the ISSM repository to be located. If you plan to make contributions to the code base, we recommend that you check out a copy via SSH with,
@@ -28,31 +32,25 @@ Note that checkout via HTTPS does not require credentials, but does not allow co
 ## Committing Changes to the Repository
 A good basic workflow for committing changes to the repository is,
 
-1. Stash your local changes
-```
+```bash
+#1. Stash your local changes
 git stash
-```
 
-2. Update your local branch
-```
+#2. Update your local branch
 git pull
-```
 
-3. Merge your local changes
-```
+#3. Merge your local changes
 git stash apply
-```
 
-4. Add, commit, and push your changes
-```
+#4. Add, commit, and push your changes
 git add [file]
 git commit [-m "descriptive commit message"]
 git push
 ```
 
-5. If you have forked the ISSM repository, consider making sure that your commit passes CI workflows before submitting a pull request.
+If you have forked the ISSM repository, consider making sure that your commit passes CI workflows before submitting a pull request.
 
-6. Submit a pull request via GitHub so that project admins can review your changes and merge them into the main branch.
+Submit a pull request via GitHub so that project admins can review your changes and merge them into the main branch.
 
 If you find yourself making a lot of commits and pull requests, consider asking us to add you to the 'ISSM Contributors' group, which will allow you to make commits directly to the repository.
 

diff --git a/configure.ac b/configure.ac
@@ -1,6 +1,6 @@
 
 #Initializing configure
-AC_INIT([Ice-sheet and Sea-level System Model (ISSM)],[4.24],[https://issm.ess.uci.edu/forum/],[issm],[http://issm.jpl.nasa.gov])
+AC_INIT([Ice-sheet and Sea-level System Model (ISSM)],[4.24],[https://github.com/ISSMteam/ISSM/],[issm],[https://issmteam.github.io/ISSM-Documentation/])
 AC_CONFIG_AUX_DIR([./aux-config])	# Put config files in aux-config
 AC_CONFIG_MACRO_DIR([m4])			# m4 macros are located in m4
 m4_include([m4/issm_options.m4])
@@ -29,20 +29,23 @@ AM_PROG_AR
 #Libtool
 LT_INIT([win32-dll])
 
-#Run issm_options.m4
+# ---------------------------------------------------------------------
+#  Run ISSM’s usual option-detection macro collection
+# ---------------------------------------------------------------------
 ISSM_OPTIONS
 
-#List all Makefiles
+# ---------------------------------------------------------------------
+#  Output files
+# ---------------------------------------------------------------------
 AC_CONFIG_FILES([
-	Makefile
-	src/Makefile
-	src/c/Makefile
-	src/wrappers/Makefile
-	src/wrappers/python/Makefile
-	src/wrappers/matlab/Makefile
-	src/wrappers/javascript/Makefile
-	src/m/Makefile
+        Makefile
+        src/Makefile
+        src/c/Makefile
+        src/m/Makefile
+        src/wrappers/Makefile
+        src/wrappers/python/Makefile
+        src/wrappers/matlab/Makefile
+        src/wrappers/javascript/Makefile
 ])
 
-#End of configure.ac
 AC_OUTPUT
diff --git a/etc/environment.sh b/etc/environment.sh
@@ -386,7 +386,6 @@ if [ -d "${CURL_ROOT_TEMP}" ]; then
 	cpath_prepend "${CURL_ROOT_TEMP}/include"
 	ld_library_path_prepend "${CURL_ROOT_TEMP}/lib"
 	dyld_library_path_prepend "${CURL_ROOT_TEMP}/lib"
-	path_prepend "${CURL_ROOT_TEMP}/bin"
 fi
 
 SQLITE_ROOT_TEMP="${ISSM_EXT_DIR}/sqlite/install"

diff --git a/externalpackages/adjoinablempi/install-linux.sh b/externalpackages/adjoinablempi/install-linux.sh
@@ -6,7 +6,7 @@ set -eu
 rm -rf install src
 
 # Download source
-$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/adjoinablempi.tar.gz' 'adjoinablempi.tar.gz'
+$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://github.com/ISSMteam/ExternalPackages/raw/refs/heads/main/adjoinablempi.tar.gz' 'adjoinablempi.tar.gz'
 
 # Unpack source
 tar -zxvf adjoinablempi.tar.gz

diff --git a/externalpackages/adjoinablempi/install-mac.sh b/externalpackages/adjoinablempi/install-mac.sh
@@ -11,7 +11,7 @@ export CFLAGS=-Wno-error=implicit-function-declaration
 rm -rf install src
 
 # Download source
-$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/adjoinablempi.tar.gz' 'adjoinablempi.tar.gz'
+$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://github.com/ISSMteam/ExternalPackages/raw/refs/heads/main/adjoinablempi.tar.gz' 'adjoinablempi.tar.gz'
 
 # Unpack source
 tar -zxvf adjoinablempi.tar.gz

diff --git a/externalpackages/adjoinablempi/install-pleaides-gcc.sh b/externalpackages/adjoinablempi/install-pleaides-gcc.sh
@@ -6,7 +6,7 @@ set -eu
 rm -rf install src
 
 # Download source
-$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/adjoinablempi.tar.gz' 'adjoinablempi.tar.gz'
+$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://github.com/ISSMteam/ExternalPackages/raw/refs/heads/main/adjoinablempi.tar.gz' 'adjoinablempi.tar.gz'
 
 # Unpack source
 tar -zxf adjoinablempi.tar.gz

diff --git a/externalpackages/adjoinablempi/install-pleaides.sh b/externalpackages/adjoinablempi/install-pleaides.sh
@@ -6,7 +6,7 @@ set -eu
 rm -rf install src
 
 # Download source
-$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/adjoinablempi.tar.gz' 'adjoinablempi.tar.gz'
+$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://github.com/ISSMteam/ExternalPackages/raw/refs/heads/main/adjoinablempi.tar.gz' 'adjoinablempi.tar.gz'
 
 # Unpack source
 tar -zxf adjoinablempi.tar.gz

diff --git a/externalpackages/autotools/install-linux.sh b/externalpackages/autotools/install-linux.sh
@@ -21,7 +21,7 @@ mkdir -p ${PREFIX}
 
 # Install m4
 echo " === INSTALLING M4 ==="
-${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://ftp.gnu.org/gnu/m4/m4-${M4_VER}.tar.gz" "m4-${M4_VER}.tar.gz"
+${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://mirrors.ocf.berkeley.edu/gnu/m4/m4-${M4_VER}.tar.gz" "m4-${M4_VER}.tar.gz"
 tar -zxvf m4-${M4_VER}.tar.gz
 mv m4-${M4_VER} src
 cd src
@@ -46,7 +46,7 @@ cd ..
 # Install Autoconf
 echo " === INSTALLING AUTOCONF ==="
 rm -rf src
-${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://ftp.gnu.org/gnu/autoconf/autoconf-${AUTOCONF_VER}.tar.gz" "autoconf-${AUTOCONF_VER}.tar.gz"
+${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://mirrors.ocf.berkeley.edu/gnu/autoconf/autoconf-${AUTOCONF_VER}.tar.gz" "autoconf-${AUTOCONF_VER}.tar.gz"
 tar -zxvf autoconf-${AUTOCONF_VER}.tar.gz
 mv autoconf-${AUTOCONF_VER} src
 cd src
@@ -63,7 +63,7 @@ cd ..
 # Install Automake
 echo " === INSTALLING AUTOMAKE ==="
 rm -rf src
-${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://ftp.gnu.org/gnu/automake/automake-${AUTOMAKE_VER}.tar.gz" "automake-${AUTOMAKE_VER}.tar.gz"
+${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://mirrors.ocf.berkeley.edu/gnu/automake/automake-${AUTOMAKE_VER}.tar.gz" "automake-${AUTOMAKE_VER}.tar.gz"
 tar -zxvf automake-${AUTOMAKE_VER}.tar.gz
 mv automake-${AUTOMAKE_VER} src
 cd src
@@ -80,7 +80,7 @@ cd ..
 # Install libtool
 echo " === INSTALLING LIBTOOL ==="
 rm -rf src
-${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://ftp.gnu.org/gnu/libtool/libtool-${LIBTOOL_VER}.tar.gz" "libtool-${LIBTOOL_VER}.tar.gz"
+${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://mirrors.ocf.berkeley.edu/gnu/libtool/libtool-${LIBTOOL_VER}.tar.gz" "libtool-${LIBTOOL_VER}.tar.gz"
 tar -zxvf libtool-${LIBTOOL_VER}.tar.gz
 mv libtool-${LIBTOOL_VER} src
 cd src

diff --git a/externalpackages/autotools/install-mac.sh b/externalpackages/autotools/install-mac.sh
@@ -21,7 +21,7 @@ mkdir -p ${PREFIX}
 
 # Install m4
 echo " === INSTALLING M4 ==="
-${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://ftp.gnu.org/gnu/m4/m4-${M4_VER}.tar.gz" "m4-${M4_VER}.tar.gz"
+${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://mirrors.ocf.berkeley.edu/gnu/m4/m4-${M4_VER}.tar.gz" "m4-${M4_VER}.tar.gz"
 tar -zxvf m4-${M4_VER}.tar.gz
 mv m4-${M4_VER} src
 cd src
@@ -39,7 +39,7 @@ cd ..
 # Install Autoconf
 echo " === INSTALLING AUTOCONF =="
 rm -rf src
-${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://ftp.gnu.org/gnu/autoconf/autoconf-${AUTOCONF_VER}.tar.gz" "autoconf-${AUTOCONF_VER}.tar.gz"
+${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://mirrors.ocf.berkeley.edu/gnu/autoconf/autoconf-${AUTOCONF_VER}.tar.gz" "autoconf-${AUTOCONF_VER}.tar.gz"
 tar -zxvf autoconf-${AUTOCONF_VER}.tar.gz
 mv autoconf-${AUTOCONF_VER} src
 cd src
@@ -56,7 +56,7 @@ cd ..
 # Install Automake
 echo " === INSTALLING AUTOMAKE ==="
 rm -rf src
-${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://ftp.gnu.org/gnu/automake/automake-${AUTOMAKE_VER}.tar.gz" "automake-${AUTOMAKE_VER}.tar.gz"
+${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://mirrors.ocf.berkeley.edu/gnu/automake/automake-${AUTOMAKE_VER}.tar.gz" "automake-${AUTOMAKE_VER}.tar.gz"
 tar -zxvf automake-${AUTOMAKE_VER}.tar.gz
 mv automake-${AUTOMAKE_VER} src
 cd src
@@ -73,7 +73,7 @@ cd ..
 # Install libtool
 echo " === INSTALLING LIBTOOL ==="
 rm -rf src
-${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://ftp.gnu.org/gnu/libtool/libtool-${LIBTOOL_VER}.tar.gz" "libtool-${LIBTOOL_VER}.tar.gz"
+${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://mirrors.ocf.berkeley.edu/gnu/libtool/libtool-${LIBTOOL_VER}.tar.gz" "libtool-${LIBTOOL_VER}.tar.gz"
 tar -zxvf libtool-${LIBTOOL_VER}.tar.gz
 mv libtool-${LIBTOOL_VER} src
 cd src

diff --git a/externalpackages/dakota/install-6.2-discover.sh b/externalpackages/dakota/install-6.2-discover.sh
@@ -14,14 +14,14 @@ rm -rf install
 mkdir src build install 
 
 #Download from ISSM server
-$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/dakota-6.2-public.src.tar.gz' 'dakota-6.2-public-src.tar.gz'
+${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://github.com/ISSMteam/ExternalPackages/raw/refs/heads/main/dakota-${VER}-public-src.tar.gz" "dakota-${VER}-public-src.tar.gz"
 
 #Untar 
-tar -zxvf dakota-6.2-public-src.tar.gz
+tar -zxvf dakota-${VER}-public-src.tar.gz
 
 #Move Dakota to src directory
-mv dakota-6.2.0.src/* src
-rm -rf dakota-6.2.0.src
+mv dakota-${VER}.0.src/* src
+rm -rf dakota-${VER}.0.src
 
 #Set up Dakota cmake variables and config
 export DAK_SRC=$ISSM_DIR/externalpackages/dakota/src

diff --git a/externalpackages/dakota/install-6.2-ghub-workspace_10.sh b/externalpackages/dakota/install-6.2-ghub-workspace_10.sh
@@ -32,7 +32,7 @@ rm -rf ${DAK_BUILD} ${DAK_INSTALL} ${DAK_SRC}
 mkdir -p ${DAK_BUILD} ${DAK_INSTALL} ${DAK_SRC}
 
 # Download source
-${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/dakota-${VER}-public.src.tar.gz" "dakota-${VER}-public-src.tar.gz"
+${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://github.com/ISSMteam/ExternalPackages/raw/refs/heads/main/dakota-${VER}-public-src.tar.gz" "dakota-${VER}-public-src.tar.gz"
 
 # Unpack source
 tar -zxvf dakota-${VER}-public-src.tar.gz

diff --git a/externalpackages/dakota/install-6.2-linux-static.sh b/externalpackages/dakota/install-6.2-linux-static.sh
@@ -33,7 +33,7 @@ rm -rf ${DAK_BUILD} ${DAK_INSTALL} ${DAK_SRC}
 mkdir -p ${DAK_BUILD} ${DAK_INSTALL} ${DAK_SRC}
 
 # Download source
-${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/dakota-${VER}-public.src.tar.gz" "dakota-${VER}-public-src.tar.gz"
+${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://github.com/ISSMteam/ExternalPackages/raw/refs/heads/main/dakota-${VER}-public-src.tar.gz" "dakota-${VER}-public-src.tar.gz"
 
 # Unpack source
 tar -zxvf dakota-${VER}-public-src.tar.gz

diff --git a/externalpackages/dakota/install-6.2-linux.sh b/externalpackages/dakota/install-6.2-linux.sh
@@ -30,7 +30,7 @@ rm -rf ${DAK_BUILD} ${DAK_INSTALL} ${DAK_SRC}
 mkdir -p ${DAK_BUILD} ${DAK_INSTALL} ${DAK_SRC}
 
 # Download source
-${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/dakota-${VER}-public.src.tar.gz" "dakota-${VER}-public-src.tar.gz"
+${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://github.com/ISSMteam/ExternalPackages/raw/refs/heads/main/dakota-${VER}-public-src.tar.gz" "dakota-${VER}-public-src.tar.gz"
 
 # Unpack source
 tar -zxvf dakota-${VER}-public-src.tar.gz

diff --git a/externalpackages/dakota/install-6.2-lonestar.sh b/externalpackages/dakota/install-6.2-lonestar.sh
@@ -14,14 +14,14 @@ rm -rf install
 mkdir src build install 
 
 #Download from ISSM server
-$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/dakota-6.2-public.src.tar.gz' 'dakota-6.2-public-src.tar.gz'
+${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://github.com/ISSMteam/ExternalPackages/raw/refs/heads/main/dakota-${VER}-public-src.tar.gz" "dakota-${VER}-public-src.tar.gz"
 
 #Untar 
-tar -zxvf dakota-6.2-public-src.tar.gz
+tar -zxvf dakota-${VER}-public-src.tar.gz
 
 #Move Dakota to src directory
-mv dakota-6.2.0.src/* src
-rm -rf dakota-6.2.0.src
+mv dakota-${VER}.0.src/* src
+rm -rf dakota-${VER}.0.src
 
 #Set up Dakota cmake variables and config
 export DAK_SRC=$ISSM_DIR/externalpackages/dakota/src

diff --git a/externalpackages/dakota/install-6.2-mac-static.sh b/externalpackages/dakota/install-6.2-mac-static.sh
@@ -22,19 +22,19 @@ LIBGCC=$(find ${LIBGFORTRAN_ROOT} -name libgcc* 2>/dev/null | egrep -n libgcc.a
 
 ## Environment
 #
-export BLAS_LIBS="-L${BLAS_ROOT}/lib -lfblas ${LIBGFORTRAN_ROOT}/libgfortran.a ${LIBGFORTRAN_ROOT}/libquadmath.a ${LIBGCC}" # Need to export BLAS_LIBS *and* pass it as an option to CMake to ensure that external packages also find it
+export BLAS_LIBS="-lblas ${LIBGFORTRAN_ROOT}/libgfortran.a ${LIBGFORTRAN_ROOT}/libquadmath.a ${LIBGCC}" # Need to export BLAS_LIBS *and* pass it as an option to CMake to ensure that external packages also find it
 export DAK_BUILD=${ISSM_DIR}/externalpackages/dakota/build # DO NOT CHANGE THIS
 export DAK_INSTALL=${PREFIX} # DO NOT CHANGE THIS
 export DAK_SRC=${ISSM_DIR}/externalpackages/dakota/src # DO NOT CHANGE THIS
-export LAPACK_LIBS="-L${LAPACK_ROOT}/lib -lflapack ${LIBGFORTRAN_ROOT}/libgfortran.a ${LIBGFORTRAN_ROOT}/libquadmath.a ${LIBGCC}" # Need to export LAPACK_LIBS *and* pass it as an option to CMake to ensure that external packages also find it
+export LAPACK_LIBS="-llapack ${LIBGFORTRAN_ROOT}/libgfortran.a ${LIBGFORTRAN_ROOT}/libquadmath.a ${LIBGCC}" # Need to export LAPACK_LIBS *and* pass it as an option to CMake to ensure that external packages also find it
 export LDFLAGS="-framework CoreFoundation"
 
 # Cleanup
 rm -rf ${DAK_BUILD} ${DAK_INSTALL} ${DAK_SRC}
 mkdir -p ${DAK_BUILD} ${DAK_INSTALL} ${DAK_SRC}
 
 # Download source
-${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/dakota-${VER}-public.src.tar.gz" "dakota-${VER}-public-src.tar.gz"
+${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://github.com/ISSMteam/ExternalPackages/raw/refs/heads/main/dakota-${VER}-public-src.tar.gz" "dakota-${VER}-public-src.tar.gz"
 
 # Unpack source
 tar -zxvf dakota-${VER}-public-src.tar.gz

diff --git a/externalpackages/dakota/install-6.2-mac.sh b/externalpackages/dakota/install-6.2-mac.sh
@@ -19,20 +19,20 @@ LIBGFORTRAN_ROOT=${LIBGFORTRAN%/*}
 
 ## Environment
 #
-export BLAS_LIBS="-L${BLAS_ROOT}/lib -lfblas" # Need to export BLAS_LIBS *and* pass it as an option to CMake to ensure that external packages also find it
+export BLAS_LIBS="-lblas" # Need to export BLAS_LIBS *and* pass it as an option to CMake to ensure that external packages also find it
 export DAK_BUILD=${ISSM_DIR}/externalpackages/dakota/build # DO NOT CHANGE THIS
 export DAK_INSTALL=${PREFIX} # DO NOT CHANGE THIS
 export DAK_SRC=${ISSM_DIR}/externalpackages/dakota/src # DO NOT CHANGE THIS
 export FLIBS="-L${LIBGFORTRAN_ROOT} -lgfortran"
-export LAPACK_LIBS="-L${LAPACK_ROOT}/lib -lflapack" # Need to export LAPACK_LIBS *and* pass it as an option to CMake to ensure that external packages also find it
+export LAPACK_LIBS="-llapack" # Need to export LAPACK_LIBS *and* pass it as an option to CMake to ensure that external packages also find it
 export LDFLAGS="-framework CoreFoundation"
 
 # Cleanup
 rm -rf ${DAK_BUILD} ${DAK_INSTALL} ${DAK_SRC}
 mkdir -p ${DAK_BUILD} ${DAK_INSTALL} ${DAK_SRC}
 
 # Download source
-${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/dakota-${VER}-public.src.tar.gz" "dakota-${VER}-public-src.tar.gz"
+${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://github.com/ISSMteam/ExternalPackages/raw/refs/heads/main/dakota-${VER}-public-src.tar.gz" "dakota-${VER}-public-src.tar.gz"
 
 # Unpack source
 tar -zxvf dakota-${VER}-public-src.tar.gz
-Original file line number
+Diff line change
@@ Expand Up / @@ -2,6 +2,7 @@ @@
     #==================
     *.a
     *.al
+    *.js
     *.la
     *.lo
     *.mexa64
@@ Expand All / @@ -10,6 +11,7 @@ @@
     *.pyo
     *.so
     *.so.[0-9]*
+    *.wasm
     __pycache__
     bin/
     lib/
@@ Expand Down @@