Fix and QA May 10 2026 develop branch

[harshula]

At the moment we have a two step process to update the the spack-packages version used by ACCESS-NRI's Spack instances.

1. Update this repository's access/v1.1 branch.
2. Update the commit hash used for the builtin in https://github.com/ACCESS-NRI/spack-config/blob/main/v1.1/repos.yaml

[harshula]

Testing

• No failures: https://github.com/ACCESS-NRI/access-spack-packages/actions/runs/25794565143

ALL
2c8634c9e96c10ea53a2ce7690ab9acbf21c2cb4
api-v2
main
access/releases/v1.1

 Inputs
    spack-manifest-repository: ACCESS-NRI/access-spack-packages
    spack-manifest-repository-ref: 
    spack-manifest-path: .github/build-ci/manifests/cice4/intel.spack.yaml.j2
    spack-manifest-data-path: .github/build-ci/data/standard_definitions.json
    spack-manifest-data-pairs: package cice4
    spack-compiler-manifest-path: 
    ref: 15bbb61707e41430facbb0b1d305a6b9c4cb7c4c
    spack-config-ref: main
    builtin-spack-packages-ref: 2c8634c9e96c10ea53a2ce7690ab9acbf21c2cb4
    access-spack-packages-ref: api-v2
    spack-ref: access/releases/v1.1
    pytest-test-markers: 
    allow-ssh-into-spack-install: false
    container-image-version: :rocky
    spack-oci-buildcache-url: 
    run-self-hosted: true
    packages-to-test: ALL

[harshula]

Just reverting a878a3a was insufficient:

$ git log -2 access/v1.1-test2
commit 240939b9b2719c1910db05fb5973df0c7a9c7afa (HEAD -> access/v1.1-test2, origin/access/v1.1-test2)
Author: Harshula Jayasuriya <harshula.jayasuriya@anu.edu.au>
Date:   Mon May 11 12:36:45 2026 +1000

    Reapply "gcc: use link type dep for binutils"
    
    This reverts commit a878a3a62910db7d716790269874e04980fd5b91.

commit 59e541a3024109b1aeef23f60d5358e36a52ad89 (origin/develop, origin/access/v1.1, origin/HEAD, develop, access/v1.1)
Author: Seth R. Johnson <johnsonsr@ornl.gov>
Date:   Sun May 10 20:11:55 2026 -0400

    libxml2: add external find (#4562)

$ git show test2
commit 3a018fb8b6771fb3bd3efb66dc0f0063723442c9 (HEAD -> test2, origin/test2)
Author: Harshula Jayasuriya <harshula.jayasuriya@anu.edu.au>
Date:   Tue May 12 11:36:39 2026 +1000

    v1.1/repos.yaml: access/v1.1-test2

diff --git a/v1.1/repos.yaml b/v1.1/repos.yaml
index d690a9d..39723e2 100644
--- a/v1.1/repos.yaml
+++ b/v1.1/repos.yaml
@@ -6,5 +6,5 @@ repos:
     destination: $spack/../access-spack-packages
   builtin::
     git: https://github.com/ACCESS-NRI/upstream-spack-packages.git
-    branch: access/v1.1-test
+    branch: access/v1.1-test2
     destination: $spack/../spack-packages



$ docker build -f Dockerfile -t spack-dev-rocky:v1.1.1-20260512 --build-arg SPACK_CONFIG_REPO_VERSION=test2 --target dev --no-cache --progress=plain .


#9 1818.8 ==> Installing intel-oneapi-compilers-2025.2.0-xf2j4pkvjfy7jy6zmlticbw2kur3o72f [2/2]
#9 1819.6 Spack v1.x detects compilers directly
#9 1819.6 spack-config v1.x manages access-spack-packages directly
#9 1819.6 Cloning into '/opt/ACCESS-OM2'...
#9 1847.9 ==> Error: failed to concretize `access-om2` for the following reasons:
#9 1847.9      1. Cannot satisfy 'intel-oneapi-runtime@=2023.2.4' 1(2025.2.0)
#9 1847.9      2. Cannot satisfy 'intel-oneapi-runtime@=2023.2.4' 4(2025.2.0)
#9 1847.9         required because intel-oneapi-runtime %[deptypes=build] oneapi/ejqzfefpawwr53i5qfqtaywf6oudm5hw requires intel-oneapi-runtime@=2023.2.4 %gcc-runtime@8.5.0 at runtime 
#9 1847.9           required because intel-oneapi-compilers@2025.2.0 is a requirement for package c 
#9 1847.9             required because intel-oneapi-compilers@2025.2.0 is a requirement for package cxx 
#9 1847.9               required because intel-oneapi-compilers@2025.2.0 is a requirement for package fortran 
#9 1847.9             required because intel-oneapi-compilers@2025.2.0 is a requirement for package fortran 
#9 1847.9           required because intel-oneapi-compilers@2025.2.0 is a requirement for package cxx 
#9 1847.9           required because intel-oneapi-compilers@2025.2.0 is a requirement for package fortran 
#9 1866.1 ==> Error: failed to concretize `access-om2` for the following reasons:
#9 1866.1      1. Cannot satisfy 'intel-oneapi-runtime@=2023.2.4' 1(2025.2.0)
#9 1866.1      2. Cannot satisfy 'intel-oneapi-runtime@=2023.2.4' 4(2025.2.0)
#9 1866.1         required because intel-oneapi-runtime %[deptypes=build] oneapi/ejqzfefpawwr53i5qfqtaywf6oudm5hw requires intel-oneapi-runtime@=2023.2.4 %gcc-runtime@8.5.0 at runtime 
#9 1866.1           required because intel-oneapi-compilers@2025.2.0 is a requirement for package c 
#9 1866.1             required because intel-oneapi-compilers@2025.2.0 is a requirement for package cxx 
#9 1866.1               required because intel-oneapi-compilers@2025.2.0 is a requirement for package fortran 
#9 1866.1             required because intel-oneapi-compilers@2025.2.0 is a requirement for package fortran 
#9 1866.1           required because intel-oneapi-compilers@2025.2.0 is a requirement for package cxx 
#9 1866.1           required because intel-oneapi-compilers@2025.2.0 is a requirement for package fortran 
#9 1867.7 ==> Removing all temporary build stages
#9 1867.7 ==> Removing cached downloads
#9 DONE 1867.8s

#10 exporting to image
#10 exporting layers
#10 exporting layers 15.2s done
#10 writing image sha256:984496a95ed68d3d742e082b02e249cc333702d646d56b48535e36d453d0fb98 done
#10 naming to docker.io/library/spack-dev-rocky:v1.1.1-20260512 done
#10 DONE 15.2s

[aidanheerdegen]

Looks good, thanks @harshula

[harshula]

Tag 2026.05.19 contains the following three non-upstream commits:

commit 6d14edea6dd551f907fb2f1f0e939016dd2b26b7 (HEAD -> access/v1.1, tag: 2026.05.19, origin/access/v1.1)
Author: Harshula Jayasuriya <harshula.jayasuriya@anu.edu.au>
Date:   Wed May 13 20:20:19 2026 +1000

    fckit: fix error: no member named 'lookup' in 'eckit::system::Library'
    
    * Fixed in 0.14.2: https://github.com/ecmwf/fckit/pull/84

commit 2a72caf1218ed648d05daf976e3e858ff7269c91
Author: Harshula Jayasuriya <harshula.jayasuriya@anu.edu.au>
Date:   Mon May 11 12:36:45 2026 +1000

    Reapply "gcc: use link type dep for binutils"
    
    This reverts commit a878a3a62910db7d716790269874e04980fd5b91.

commit b40d4e43e0ad068f205216d1cc5ea6ba2e03b3a2
Author: Harshula Jayasuriya <harshula.jayasuriya@anu.edu.au>
Date:   Mon May 11 12:36:09 2026 +1000

    Revert "intel-oneapi: constrain gcc-runtime to gcc version"
    
    This reverts commit e40da0e4caa82ce61118ff2f5482993915b818b3.