Releases: AMRverse/AMRrules
AMRrules v1.0.0
Version 1 release of AMRrules engine and associated rulesets. Rules have been curated by the ESGEM-AMR working group, and the engine supports interpretation of AMRFinderPlus output.
Current rulesets and supported organisms can be found here, and browsed interactively in the AMRrules Browser.
In this release rules focus mainly on core genes and expected resistances, however acquired genes and mutations are included for some organisms already and will be added to others as the necessary data to define them accurately is accumulated and curated by the ESGEM-AMR working group.
v0.2-beta
Beta release with the first set of AMRrules, curated by the ESGEM-AMR working group; and code to interpret AMRfinderplus output according to these rules.
Initial rule curation has focused on defining rules for the interpretation of core genes and expected resistances, but acquired genes and mutations are included for some organism, and will be added to others as the necessary data to define them accurately is accumulated and curated by the ESGEM-AMR working group.
Organisms currently covered include the ESKAPE pathogens + E. coli, Salmonella, Yersinia, and Neisseria gonorrhoeae.
This is a beta release, please post issues regarding rules and interpretation code to the github repo.