Feature/output names - #15

Merged

kfang4 merged 21 commits into

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feature/output-names

Jul 22, 2025

Commits on Jul 21, 2025

Rename output files and output merged adata metadata
kfang4
committed
10d2735
Use Pearsons residuals for HVG and output gene features
kfang4
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65f9055
Remove cross-team cohort analysis and update README
kfang4
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f7be1f9
Update inputs JSON
kfang4
committed
44bcfc7
Update wdl-ci
kfang4
committed
f40d88d
Update wdl-ci
kfang4
committed
6186f36
update wdl-ci config file after successful tests
github-actions[bot]
committed
05ec362

Commits on Jul 22, 2025

Bump package versions
kfang4
committed
5b5b4fb
Merge branch 'feature/output-names' of https://github.com/ASAP-CRN/pmdbs-spatial-transcriptomics-wf into feature/output-names
kfang4
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6e8a483
Use scanpy experimental hvg
kfang4
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25ed6d8
Rename output files and export final metadata and adata
kfang4
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339878e
update wdl-ci config file after successful tests
github-actions[bot]
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d68e27f
Use histplot instead of deprecated distplot
kfang4
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58f8182
update wdl-ci config file after successful tests
github-actions[bot]
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e01e921
Revert back to seurat instead of pearsons residuals
kfang4
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b438aa0
update wdl-ci config file after successful tests
github-actions[bot]
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f444913
Sort by flavor Seurat columns
kfang4
committed
4b61d41
update wdl-ci config file after successful tests
github-actions[bot]
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a597ca3
Fix naming in wdl-ci
kfang4
committed
5c77762
update wdl-ci config file after successful tests
github-actions[bot]
committed
046b1f6
Clean up README and update wf-common
kfang4
committed
51a6c0f