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Feature/minor release updates
- #19
#19
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kfang4
merged 12 commits into
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ASAP-CRN/spatial-transcriptomics-wf:main
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feature/minor-release-updates
ASAP-CRN/spatial-transcriptomics-wf:feature/minor-release-updates
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Nov 7, 2025
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Feature/minor release updates
#19
kfang4
merged 12 commits into
main
ASAP-CRN/spatial-transcriptomics-wf:main
from
feature/minor-release-updates
ASAP-CRN/spatial-transcriptomics-wf:feature/minor-release-updates
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Commits on Oct 31, 2025
Select n_comps for PCA based on number of cells and genes
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Bump patch for workflow version
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Update spatial_py docker image version in workflow
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Determine n_comps with number of cells and genes when clustering
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Update spatial_py docker image in integrate_data wdl
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Commits on Nov 3, 2025
Clean up adata.obs and .uns for plotting spatial image
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Filter spots on slides when computing spatially variable genes
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Commits on Nov 4, 2025
update wdl-ci config file after successful tests
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Remove check_h5ad for integrate_data tasks because it is shared among Visium and GeoMx
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update wdl-ci config file after successful tests
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Commits on Nov 7, 2025
Update submodule
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Merge branch 'main' of https://github.com/ASAP-CRN/pmdbs-spatial-transcriptomics-wf into feature/minor-release-updates
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