Functions to download content from aws s3
Installation:
python3 -m venv .p
source .p/bin/activate
pip install --upgrade pip wheel
pip install -r requirements.txt
Use s3.py
python3 s3.py -u ["URL"] -l ["LOCAL_DIR"]
Exemple:
python s3.py -u s3://giab/data/NA12878/NIST_NA12878_HG001_HiSeq_300x/140407_D00360_0017_BH947YADXX/Project_RM8398/Sample_U5c/U5c_CCGTCC_L001_R2_001.fastq.gz -l .
python s3.py -u s3://giab/changelog_details/ -l .
Use downloadFile-s3.py
python3 downloadFile-s3.py -u ["URL"] -l ["LOCAL_DIR"]
Example:
python downloadFile-s3.py -u "s3://giab/data/NA12878/NIST_NA12878_HG001_HiSeq_300x/140407_D00360_0017_BH947YADXX/Project_RM8398/Sample_U5c/U5c_CCGTCC_L001_R2_001.fastq.gz" -l .
Use downloadFolder-s3.py
python3 downloadFolder-s3.py -u["URL"]
Example:
python downloadFolder-s3.py -u s3://giab/changelog_details/