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Aharoni-Lab / indeca Public

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Trying to speed up sparse matrix compression usage#40

Draft

daharoni wants to merge 11 commits into

mainAharoni-Lab/indeca:mainfrom

sparse-matrix-compression-speedupAharoni-Lab/indeca:sparse-matrix-compression-speedupCopy head branch name to clipboard

Conversation Commits11 (11)Checks Files changed

Draft

Trying to speed up sparse matrix compression usage#40
daharoni wants to merge 11 commits into
mainfrom
sparse-matrix-compression-speedup

Commits

Commits on Dec 13, 2025

Initial refactor attempt
daharoni
committed
small fixes based on tests errors
daharoni
committed
add option to include legacy bug for comparing to old deconv code
daharoni
committed
black formatting
daharoni
committed

Commits on Dec 14, 2025

refactor pipeline
daharoni
committed
black format
daharoni
committed
add yappi and snakeviz for function level profiling
daharoni
committed

Commits on Dec 15, 2025

precompute square of Wt matrix
daharoni
committed
optimize all instances of self.Wt.T @ self.Wt
daharoni
committed
add result plotting of pipeline after profile run
daharoni
committed
optimize more by doing row-scalling of Mw
daharoni
committed

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