Hi,
Thanks for useful tool! I have a question about the situation if our phage sequence occurs in two different genomes? Adding both of them to the dataset will definitely affect mapping quality. However, I'm curious how to deal with this problem?
Should I run the same sample to different bacterial genomes (but with the same phage sequence inside) separately?
Hi,
Thanks for useful tool! I have a question about the situation if our phage sequence occurs in two different genomes? Adding both of them to the dataset will definitely affect mapping quality. However, I'm curious how to deal with this problem?
Should I run the same sample to different bacterial genomes (but with the same phage sequence inside) separately?