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How the size of the database affect mapping quality and activity estimation?

Status: Open.

#16 In AnantharamanLab/PropagAtE;

· rozwalak opened on Aug 2, 2024

Same phage sequence and different hosts

Status: Open.

#15 In AnantharamanLab/PropagAtE;

· rozwalak opened on Aug 2, 2024

Different "active" results from "-r" and "-b" as input for coverage information

Status: Open.

#14 In AnantharamanLab/PropagAtE;

· danzheng7372 opened on Apr 19, 2024

How to Interpret Prophage/Host Ratio

Status: Open.

#13 In AnantharamanLab/PropagAtE;

· joshuakirsch opened on Jan 27, 2024

Processing PropagAtE output

Status: Open.

#11 In AnantharamanLab/PropagAtE;

· asierFernandezP opened on Jun 5, 2023

Size Fractionation

Status: Open.

#9 In AnantharamanLab/PropagAtE;

· Drob84761 opened on Apr 14, 2023

Dereplicated viral contigs as input

Status: Open.

#8 In AnantharamanLab/PropagAtE;

· asierFernandezP opened on Dec 18, 2022

Could PropagAtE be applied to MAG data?

Status: Open.

#7 In AnantharamanLab/PropagAtE;

· WoCer2019 opened on Nov 30, 2022

Question about -f and -v input file?

Status: Open.

#5 In AnantharamanLab/PropagAtE;

· YAYA530 opened on Mar 16, 2022

KeyError: [genome] for "l = prophage_lengths[key]" (v1.1.0)

Status: Open.

#4 In AnantharamanLab/PropagAtE;

· KrisKieft opened on Dec 14, 2021

Issue at Performing statistical tests stage

Status: Open.

#3 In AnantharamanLab/PropagAtE;

· sgsutcliffe opened on Apr 13, 2021

Special characters in genome name broke the samtools depth step

Status: Open.

#2 In AnantharamanLab/PropagAtE;

· sgsutcliffe opened on Mar 1, 2021