GitHub - AndreinaCastillo/SynMap2GCcontent: All files from old computer

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Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
.ipynb_checkpoints		.ipynb_checkpoints
Data		Data
AT%, GC%, N%, X% calculator per window size and per chromosome. Each % value is on a different track .ipynb		AT%, GC%, N%, X% calculator per window size and per chromosome. Each % value is on a different track .ipynb
AT%, GC%, N%, X% calculator per window size and per chromosome. Each % value is on a different track ONLY ONE INPUT AND ORIGINAL IMPORTS.ipynb		AT%, GC%, N%, X% calculator per window size and per chromosome. Each % value is on a different track ONLY ONE INPUT AND ORIGINAL IMPORTS.ipynb
Efficient ATGC counter per chromosome or contig.ipynb		Efficient ATGC counter per chromosome or contig.ipynb
Heatmap.ipynb		Heatmap.ipynb
Latest version for GC window sliding window counter (file as a table output).ipynb		Latest version for GC window sliding window counter (file as a table output).ipynb
Plasmodium__test.faa		Plasmodium__test.faa
Plasmodium_chabaudi_chabaudi_TEST2.faa		Plasmodium_chabaudi_chabaudi_TEST2.faa
Plasmodium_chabaudi_chabaudi_strain_AS.faa		Plasmodium_chabaudi_chabaudi_strain_AS.faa
Plasmodium_falciparum_IT.faa		Plasmodium_falciparum_IT.faa
Plasmodium_inui_San_Antonio_test2.faa		Plasmodium_inui_San_Antonio_test2.faa
Plasmodium_inui_San_Antonio_test3.faa		Plasmodium_inui_San_Antonio_test3.faa
Plasmodium_inui_San_Antonio_test4.faa		Plasmodium_inui_San_Antonio_test4.faa
Plasmodium_inui_San_Antonio_test5.faa		Plasmodium_inui_San_Antonio_test5.faa
Plotly_sequence_reader_GC_counter_per_position.ipynb		Plotly_sequence_reader_GC_counter_per_position.ipynb
Plotly_sequence_reader_GC_counter_per_position_WITH_range_selector.ipynb		Plotly_sequence_reader_GC_counter_per_position_WITH_range_selector.ipynb
Plotly_sequence_reader_GC_counter_per_position_WITH_range_selector_AND_different_tracks.ipynb		Plotly_sequence_reader_GC_counter_per_position_WITH_range_selector_AND_different_tracks.ipynb
Sliding window v1 (all functions on same input).ipynb		Sliding window v1 (all functions on same input).ipynb
Sliding window v2 (separated functions).ipynb		Sliding window v2 (separated functions).ipynb
Sliding window v3.0 (names can be modified all original functions).ipynb		Sliding window v3.0 (names can be modified all original functions).ipynb
Sliding window v3.1 (separated functions and correct names).ipynb		Sliding window v3.1 (separated functions and correct names).ipynb
Sliding window v3.5 LATEST WORKING VERSION LIKELY TIME AND MEMORY INEFICIENT.ipynb		Sliding window v3.5 LATEST WORKING VERSION LIKELY TIME AND MEMORY INEFICIENT.ipynb
Untitled.ipynb		Untitled.ipynb
Untitled1.ipynb		Untitled1.ipynb
Untitled2.ipynb		Untitled2.ipynb
Untitled3.ipynb		Untitled3.ipynb
Untitled4.ipynb		Untitled4.ipynb
Untitled5.ipynb		Untitled5.ipynb
contigSrtPlasmoDBberghei		contigSrtPlasmoDBberghei
contigSrtPlasmoDBreichenowiCDC		contigSrtPlasmoDBreichenowiCDC
jic2Untitled5.ipynb		jic2Untitled5.ipynb
jicUntitled5.ipynb		jicUntitled5.ipynb
minitestdata.fasta		minitestdata.fasta
requirements.txt		requirements.txt
size-margins.html		size-margins.html
test		test