Conversation
xpillons
requested changes
Apr 5, 2023
| // MariaDB | ||
| AllowMariaDBIn : ['700', 'Inbound', 'Allow', 'Tcp', 'MariaDB', 'asg', 'asg-mariadb-client', 'subnet', 'admin'] | ||
|
|
||
| // Cluster applications |
Collaborator
There was a problem hiding this comment.
I would try to make this generic.
| {% endif %} | ||
| {% endfor %} | ||
|
|
||
| {% if cryosparc_enabled %} |
Collaborator
There was a problem hiding this comment.
This for me is too application specific and we can't do this for every app. This could be solved by having single node definition, on which we could specify which cluster-init project to add
|
Hi - what is the status of this. We would be interested to use az-hop for cryosparc deployment |
line 138 has an extra `{% endif % }` that causes failure during configuration
* Update slurm_cluster_info.json updated `worker_bin_path` to match install path * Update 03-install_cryosparc.sh.j2 added section to connect worker nodes to the master
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Provide option in
config.ymlto install and setup CryoSPARC on top of Slurm cluster.CryoSPARC master/worker architecture is implemented by deploying the master node as cluster login node and workload submitted to CycleCloud Slurm scheduler. CryoSPARC installation and configuration is performed via dedicated CycleCloud project. Multiple Slurm partitions can be configured as CryoSPARC lanes with the
applications.target_queuesvariable.Due to hardcoded absolute paths in CryoSPARC code the portal is not reachable through the OOD proxy. Until a suitable OOD feature is available (OSC/ondemand#2311), CryoSPARC portal is accessible in Az-HOP from a Linux interactive session. An XFCE application menu shortcut is added in Education -> CryoSPARC.