Add package interface

[AtMostafa]

a bit of a nasty PR, to fix the #39 and allow importing bnd

[Copilot]

Pull Request Overview

This PR refactors the import statements throughout the package to use relative imports and defines a cleaner package interface to fix issue #39 and allow importing bnd as a package. Key changes include updating all import paths (e.g., from "bnd" to relative paths), adding a new function (download_animal) in data_transfer.py, and revising the init.py to export a public interface.

Reviewed Changes

Copilot reviewed 14 out of 14 changed files in this pull request and generated no comments.

Show a summary per file

File	Description
bnd/update_bnd.py	Changed absolute imports to relative imports for logger and config.
bnd/pipeline/pyaldata.py	Refactored imports for logger, config, and nwb conversion.
bnd/pipeline/nwbtools/*	Updated all imports using relative paths for consistency.
bnd/pipeline/nwb.py, kilosort.py, init.py	Adjusted module-level imports; modified init.py to define package interface and export functions.
bnd/data_transfer.py	Added new download_animal function with updated import paths.
bnd/config.py, bnd/cli.py	Updated import statements to use relative imports.
bnd/logger.py	Introduced as the centralized logging module for all package modules.

Comments suppressed due to low confidence (1)

bnd/init.py:5

• Elements in all should be strings representing the names of the exported objects. Consider updating this line to: all = ['dl', 'up', 'to_pyal', 'batch_ks', 'upload_session', 'download_session', 'download_animal'] to adhere to standard practice.

__all__ = [dl, up, to_pyal, batch_ks, upload_session, download_session, download_animal]

[AtMostafa]

tested and it surprisingly works!