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ntRoot v1.1.0

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@lcoombe lcoombe released this 19 Jun 22:10
· 48 commits to main since this release
v1.1.0
39b8717
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Learn about vigilant mode.
  • Release v1.1.0
  • Added feature to allow for inferring ancestry from a provided VCF
    • When --custom_vcf is specified, ntRoot will use this VCF for inferring ancestry instead of running ntEdit
    • When using an ntEdit VCF file with a new -l variant call set, use --strip_info to ensure that there are no collisions between existing cross-referenced allele assignments in the ntEdit VCF and new cross-referenced alleles
  • Updated ancestry inference script to allow for comma-separated allele frequencies when alt alleles exist
  • Documentation updates
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