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The git repositories contains the source code for the pipeline that we used to create the BMCR dataset. Several pieces of code that orchestrate workload distribution are tailored to our SLURM HPC cluster. However, each individual processing script focuses on a single pipeline step and can be executed independently. Experts should be able to tailor them to their needs. Please do not hesitate if there are questions. We attached a DOI to the code: .

The related publication:

The Brain/MINDS Marmoset Connectivity Atlas: Exploring bidirectional tracing and tractography in the same stereotaxic space H. Skibbe, M.F. Rachmadi, K. Nakae, C. E. Gutierrez, J. Hata, H. Tsukada, C. Poon, K. Doya, P. Majka, M. G. P. Rosa, H. Okano, T. Yamamori, S. Ishii, M. Reisert, A. Watakabe. In bioRxiv, Cold Spring Harbor Laboratory, 2022.